Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:11023404-11779644

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Grm1 10 10686059 to 11082356 396297 - protein coding gene glutamate receptor, metabotropic 1
Gm48406 10 11035916 to 11036144 228 + pseudogene predicted gene, 48406
Tssr96696 10 11045585 to 11045596 11 - TSS region transcription start site region 96696
Cpgi1294 10 11080228 to 11080854 626 CpG island CpG island 1294
Tssr96697 10 11080987 to 11081023 36 - TSS region transcription start site region 96697
Tssr96698 10 11081092 to 11081132 40 - TSS region transcription start site region 96698
Cpgi1295 10 11081577 to 11081954 377 CpG island CpG island 1295
Tssr96699 10 11082287 to 11082372 85 - TSS region transcription start site region 96699
Cpgi1296 10 11149164 to 11150084 920 CpG island CpG island 1296
Tssr92350 10 11149387 to 11149400 13 + TSS region transcription start site region 92350
Tssr92351 10 11149406 to 11149417 11 + TSS region transcription start site region 92351
Shprh 10 11149427 to 11217595 68168 + protein coding gene SNF2 histone linker PHD RING helicase
Tssr92352 10 11149449 to 11149513 64 + TSS region transcription start site region 92352
Gm16577 10 11212280 to 11212979 699 - antisense lncRNA gene predicted gene 16577
4930432B10Rik 10 11244790 to 11281221 36431 - bidirectional promoter lncRNA gene RIKEN cDNA 4930432B10 gene
Tssr96700 10 11280360 to 11280361 1 - TSS region transcription start site region 96700
Cpgi1297 10 11280533 to 11282123 1590 CpG island CpG island 1297
Tssr92353 10 11281025 to 11281041 16 + TSS region transcription start site region 92353
Tssr96701 10 11281191 to 11281248 57 - TSS region transcription start site region 96701
Tssr92354 10 11281304 to 11281357 53 + TSS region transcription start site region 92354
Fbxo30 10 11281330 to 11297969 16639 + protein coding gene F-box protein 30
Tssr92355 10 11281360 to 11281383 23 + TSS region transcription start site region 92355
Tssr92356 10 11281553 to 11281560 7 + TSS region transcription start site region 92356
Tssr92357 10 11281583 to 11281620 37 + TSS region transcription start site region 92357
Tssr92358 10 11283214 to 11283218 4 + TSS region transcription start site region 92358
Tssr92359 10 11285004 to 11285008 4 + TSS region transcription start site region 92359
Tssr92360 10 11286234 to 11286237 3 + TSS region transcription start site region 92360
Tssr92361 10 11323419 to 11323424 5 + TSS region transcription start site region 92361
Gm48666 10 11330137 to 11330415 278 - pseudogene predicted gene, 48666
Gm25979 10 11330489 to 11330626 137 - snoRNA gene predicted gene, 25979
Cpgi1298 10 11343105 to 11344046 941 CpG island CpG island 1298
Tssr92362 10 11343387 to 11343506 119 + TSS region transcription start site region 92362
Epm2a 10 11343445 to 11457477 114032 + protein coding gene epilepsy, progressive myoclonic epilepsy, type 2 gene alpha
Tssr92363 10 11356123 to 11356128 5 + TSS region transcription start site region 92363
Rpl17-ps11 10 11386881 to 11387604 723 - pseudogene ribosomal protein L17, pseudogene 11
Cpgi1299 10 11491974 to 11492189 215 CpG island CpG island 1299
Tssr96702 10 11492001 to 11492013 12 - TSS region transcription start site region 96702
Tssr96703 10 11492109 to 11492126 17 - TSS region transcription start site region 96703
Tssr92364 10 11492125 to 11492146 21 + TSS region transcription start site region 92364
Tssr96704 10 11492174 to 11492178 4 - TSS region transcription start site region 96704
Gm48679 10 11505296 to 11505933 637 + pseudogene predicted gene, 48679
Gm48680 10 11580086 to 11587244 7158 + lincRNA gene predicted gene, 48680
Gm9797 10 11609223 to 11609835 612 + pseudogene predicted pseudogene 9797
Tssr92365 10 11609256 to 11609269 13 + TSS region transcription start site region 92365
D10Mit80 10 11642896 to 11643049 153 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 80
Xiaf3 10 11642896 to 53772211 42129315 heritable phenotypic marker X inactivation autosomal factor 3
Gm22546 10 11648005 to 11648134 129 + snoRNA gene predicted gene, 22546