Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:108853875-110953900

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Syt1 10 108497650 to 109010978 513328 - protein coding gene synaptotagmin I
Tssr99219 10 108879746 to 108879751 5 - TSS region transcription start site region 99219
Tssr99220 10 108879772 to 108879783 11 - TSS region transcription start site region 99220
Tssr99221 10 108894894 to 108894905 11 - TSS region transcription start site region 99221
Tssr99222 10 108902252 to 108902265 13 - TSS region transcription start site region 99222
A130086K04Rik 10 108917235 to 108921548 4313 unclassified gene RIKEN cDNA A130086K04 gene
6430709C05Rik 10 108932616 to 108934149 1533 unclassified gene RIKEN cDNA 6430709C05 gene
Gm47477 10 108953357 to 108956488 3131 - unclassified gene predicted gene, 47477
Tssr99223 10 109009055 to 109009105 50 - TSS region transcription start site region 99223
Cpgi2178 10 109010389 to 109010994 605 CpG island CpG island 2178
Tssr99224 10 109010608 to 109010619 11 - TSS region transcription start site region 99224
Tssr99225 10 109010621 to 109010685 64 - TSS region transcription start site region 99225
Tssr99226 10 109010690 to 109010723 33 - TSS region transcription start site region 99226
Tssr99227 10 109010735 to 109010746 11 - TSS region transcription start site region 99227
Tssr99228 10 109010860 to 109010918 58 - TSS region transcription start site region 99228
Tssr99229 10 109010922 to 109010952 30 - TSS region transcription start site region 99229
Tssr99230 10 109010955 to 109010983 28 - TSS region transcription start site region 99230
Cpgi2179 10 109011479 to 109011788 309 CpG island CpG island 2179
Gm22097 10 109089998 to 109090275 277 - unclassified non-coding RNA gene predicted gene, 22097
D10Mit99 10 109126566 to 109126704 138 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 99
Tssr95683 10 109137294 to 109137297 3 + TSS region transcription start site region 95683
Tssr3347 10 109309452 to 109309455 3 - TSS region transcription start site region 3347
Gm44495 10 109326769 to 109326851 82 - miRNA gene predicted gene, 44495
Gm23041 10 109368088 to 109368193 105 - snRNA gene predicted gene, 23041
Gm47329 10 109386267 to 109386487 220 - pseudogene predicted gene, 47329
D10Mit203 10 109415238 to 109415381 143 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 203
Gm40757 10 109597698 to 109642136 44438 + lncRNA gene predicted gene, 40757
Tssr99231 10 109638849 to 109638853 4 - TSS region transcription start site region 99231
Tssr3348 10 109642451 to 109642456 5 + TSS region transcription start site region 3348
3110043J17Rik 10 109648779 to 109649538 759 + unclassified gene RIKEN cDNA 3110043J17 gene
Nav3 10 109681573 to 110455897 774324 - protein coding gene neuron navigator 3
Cpgi2180 10 109684502 to 109684658 156 CpG island CpG island 2180
Cpgi2181 10 109767120 to 109767306 186 CpG island CpG island 2181
Tssr99232 10 109780080 to 109780083 3 - TSS region transcription start site region 99232
Tssr99233 10 109790172 to 109790185 13 - TSS region transcription start site region 99233
Tssr99234 10 109833195 to 109833220 25 - TSS region transcription start site region 99234
Tssr99235 10 109883738 to 109883782 44 - TSS region transcription start site region 99235
Tssr99236 10 109903814 to 109903829 15 - TSS region transcription start site region 99236
Tssr99237 10 109903830 to 109903845 15 - TSS region transcription start site region 99237
Tssr99238 10 109903852 to 109903871 19 - TSS region transcription start site region 99238
Tssr99239 10 109903875 to 109903900 25 - TSS region transcription start site region 99239
Tssr99240 10 109903911 to 109903927 16 - TSS region transcription start site region 99240
Tssr99241 10 109903952 to 109903966 14 - TSS region transcription start site region 99241
Tssr99242 10 109904012 to 109904022 10 - TSS region transcription start site region 99242
Tssr99243 10 109986532 to 109986581 49 - TSS region transcription start site region 99243
Tssr99244 10 110000902 to 110000913 11 - TSS region transcription start site region 99244
Tssr99245 10 110000934 to 110000943 9 - TSS region transcription start site region 99245
Gm3871 10 110003891 to 110013355 9464 unclassified gene predicted gene 3871
Gm36935 10 110037488 to 110037779 291 - unclassified gene predicted gene, 36935
Gm47337 10 110078691 to 110080967 2276 + unclassified gene predicted gene, 47337
Tssr99246 10 110084540 to 110084545 5 - TSS region transcription start site region 99246
Tssr99247 10 110098315 to 110098327 12 - TSS region transcription start site region 99247
Gm47339 10 110099819 to 110102904 3085 + unclassified gene predicted gene, 47339
Tssr99248 10 110126889 to 110126895 6 - TSS region transcription start site region 99248
Gm47340 10 110139739 to 110140169 430 - pseudogene predicted gene, 47340
A830061P03Rik 10 110140706 to 110144178 3472 unclassified gene RIKEN cDNA A830061P03 gene
Tssr99249 10 110149585 to 110149615 30 - TSS region transcription start site region 99249
Tssr99250 10 110152268 to 110152273 5 - TSS region transcription start site region 99250
Tssr99251 10 110337101 to 110337104 3 - TSS region transcription start site region 99251
Cpgi2182 10 110347983 to 110348141 158 CpG island CpG island 2182
Gm47338 10 110379508 to 110381661 2153 + unclassified gene predicted gene, 47338
Gm3877 10 110454687 to 110456212 1525 unclassified gene predicted gene 3877
Cpgi2183 10 110455068 to 110456442 1374 CpG island CpG island 2183
Tssr3349 10 110455914 to 110455921 7 - TSS region transcription start site region 3349
Tssr99252 10 110455921 to 110456008 87 - TSS region transcription start site region 99252
Tssr99253 10 110456197 to 110456213 16 - TSS region transcription start site region 99253
Tssr99254 10 110456214 to 110456244 30 - TSS region transcription start site region 99254
Gm47055 10 110480637 to 110481077 440 + pseudogene predicted gene, 47055
D10Mit150 10 110523231 to 110523344 113 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 150
9230102K24Rik 10 110600650 to 110615961 15311 + lincRNA gene RIKEN cDNA 9230102K24 gene
Homaq2 10 110617486 to 125680038 15062552 QTL homeostatic model assessment QTL 2
Insq12 10 110617486 to 125680038 15062552 QTL insulin QTL 12
Gm47058 10 110634269 to 110634803 534 - pseudogene predicted gene, 47058
Tssr95684 10 110660094 to 110660129 35 + TSS region transcription start site region 95684
Gm36751 10 110726276 to 110728586 2310 - lncRNA gene predicted gene, 36751
Cpgi2184 10 110735606 to 110735774 168 CpG island CpG island 2184
Cpgi2185 10 110744867 to 110746022 1155 CpG island CpG island 2185
Tssr95685 10 110745433 to 110745533 100 + TSS region transcription start site region 95685
E2f7 10 110745439 to 110787384 41945 + protein coding gene E2F transcription factor 7
Tssr95686 10 110793729 to 110793747 18 + TSS region transcription start site region 95686
Gm36808 10 110795310 to 110797370 2060 - lncRNA gene predicted gene, 36808
Gm23698 10 110796173 to 110796300 127 + snoRNA gene predicted gene, 23698
1700020G17Rik 10 110801174 to 110896507 95333 - antisense lncRNA gene RIKEN cDNA 1700020G17 gene
Tssr99255 10 110802604 to 110802613 9 - TSS region transcription start site region 99255
Tssr99256 10 110856680 to 110856691 11 - TSS region transcription start site region 99256
Tssr95687 10 110878093 to 110878109 16 + TSS region transcription start site region 95687
Tssr95688 10 110878126 to 110878134 8 + TSS region transcription start site region 95688
Gm22186 10 110892298 to 110892419 121 - snoRNA gene predicted gene, 22186
Tssr99257 10 110896501 to 110896539 38 - TSS region transcription start site region 99257
Tssr99258 10 110898056 to 110898061 5 - TSS region transcription start site region 99258
Gm22236 10 110904795 to 110904900 105 - snRNA gene predicted gene, 22236
Cpgi2186 10 110919542 to 110920707 1165 CpG island CpG island 2186
Tssr95689 10 110920170 to 110920188 18 + TSS region transcription start site region 95689
Csrp2 10 110920176 to 110939514 19338 + protein coding gene cysteine and glycine-rich protein 2
Cpgi2187 10 110931823 to 110932090 267 CpG island CpG island 2187
Tssr95690 10 110931991 to 110932005 14 + TSS region transcription start site region 95690
Tssr95691 10 110933884 to 110933885 1 + TSS region transcription start site region 95691
Tssr95692 10 110934291 to 110934296 5 + TSS region transcription start site region 95692
Tssr95693 10 110937797 to 110937830 33 + TSS region transcription start site region 95693
Tssr95694 10 110937916 to 110937929 13 + TSS region transcription start site region 95694
Zdhhc17 10 110941779 to 111010066 68287 - protein coding gene zinc finger, DHHC domain containing 17