Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:108581769-110071851

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Syt1 10 108497650 to 109010978 513328 - protein coding gene synaptotagmin I
5330428N10Rik 10 108637000 to 108640078 3078 unclassified gene RIKEN cDNA 5330428N10 gene
Tssr99210 10 108642379 to 108642391 12 - TSS region transcription start site region 99210
C030018G05Rik 10 108685012 to 108685794 782 unclassified gene RIKEN cDNA C030018G05 gene
Tssr99211 10 108690212 to 108690216 4 - TSS region transcription start site region 99211
Tssr95681 10 108691021 to 108691032 11 + TSS region transcription start site region 95681
Tssr99212 10 108691139 to 108691149 10 - TSS region transcription start site region 99212
Gm5136 10 108699044 to 108700160 1116 - protein coding gene predicted gene 5136
Tssr99213 10 108699771 to 108699811 40 - TSS region transcription start site region 99213
Tssr99214 10 108700109 to 108700143 34 - TSS region transcription start site region 99214
Tssr99215 10 108710819 to 108710832 13 - TSS region transcription start site region 99215
C030044C18Rik 10 108711506 to 108712274 768 unclassified gene RIKEN cDNA C030044C18 gene
Tssr95682 10 108716563 to 108716569 6 + TSS region transcription start site region 95682
Tssr99216 10 108719477 to 108719513 36 - TSS region transcription start site region 99216
2900074G08Rik 10 108773997 to 108774545 548 unclassified gene RIKEN cDNA 2900074G08 gene
Gm47472 10 108778311 to 108782873 4562 + unclassified gene predicted gene, 47472
Tssr99217 10 108796901 to 108796904 3 - TSS region transcription start site region 99217
Tssr99218 10 108799859 to 108799864 5 - TSS region transcription start site region 99218
Tssr99219 10 108879746 to 108879751 5 - TSS region transcription start site region 99219
Tssr99220 10 108879772 to 108879783 11 - TSS region transcription start site region 99220
Tssr99221 10 108894894 to 108894905 11 - TSS region transcription start site region 99221
Tssr99222 10 108902252 to 108902265 13 - TSS region transcription start site region 99222
A130086K04Rik 10 108917235 to 108921548 4313 unclassified gene RIKEN cDNA A130086K04 gene
6430709C05Rik 10 108932616 to 108934149 1533 unclassified gene RIKEN cDNA 6430709C05 gene
Gm47477 10 108953357 to 108956488 3131 - unclassified gene predicted gene, 47477
Tssr99223 10 109009055 to 109009105 50 - TSS region transcription start site region 99223
Cpgi2178 10 109010389 to 109010994 605 CpG island CpG island 2178
Tssr99224 10 109010608 to 109010619 11 - TSS region transcription start site region 99224
Tssr99225 10 109010621 to 109010685 64 - TSS region transcription start site region 99225
Tssr99226 10 109010690 to 109010723 33 - TSS region transcription start site region 99226
Tssr99227 10 109010735 to 109010746 11 - TSS region transcription start site region 99227
Tssr99228 10 109010860 to 109010918 58 - TSS region transcription start site region 99228
Tssr99229 10 109010922 to 109010952 30 - TSS region transcription start site region 99229
Tssr99230 10 109010955 to 109010983 28 - TSS region transcription start site region 99230
Cpgi2179 10 109011479 to 109011788 309 CpG island CpG island 2179
Gm22097 10 109089998 to 109090275 277 - unclassified non-coding RNA gene predicted gene, 22097
D10Mit99 10 109126566 to 109126704 138 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 99
Tssr95683 10 109137294 to 109137297 3 + TSS region transcription start site region 95683
Tssr3347 10 109309452 to 109309455 3 - TSS region transcription start site region 3347
Gm44495 10 109326769 to 109326851 82 - miRNA gene predicted gene, 44495
Gm23041 10 109368088 to 109368193 105 - snRNA gene predicted gene, 23041
Gm47329 10 109386267 to 109386487 220 - pseudogene predicted gene, 47329
D10Mit203 10 109415238 to 109415381 143 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 203
Gm40757 10 109597698 to 109642136 44438 + lncRNA gene predicted gene, 40757
Tssr99231 10 109638849 to 109638853 4 - TSS region transcription start site region 99231
Tssr3348 10 109642451 to 109642456 5 + TSS region transcription start site region 3348
3110043J17Rik 10 109648779 to 109649538 759 + unclassified gene RIKEN cDNA 3110043J17 gene
Nav3 10 109681573 to 110455897 774324 - protein coding gene neuron navigator 3
Cpgi2180 10 109684502 to 109684658 156 CpG island CpG island 2180
Cpgi2181 10 109767120 to 109767306 186 CpG island CpG island 2181
Tssr99232 10 109780080 to 109780083 3 - TSS region transcription start site region 99232
Tssr99233 10 109790172 to 109790185 13 - TSS region transcription start site region 99233
Tssr99234 10 109833195 to 109833220 25 - TSS region transcription start site region 99234
Tssr99235 10 109883738 to 109883782 44 - TSS region transcription start site region 99235
Tssr99236 10 109903814 to 109903829 15 - TSS region transcription start site region 99236
Tssr99237 10 109903830 to 109903845 15 - TSS region transcription start site region 99237
Tssr99238 10 109903852 to 109903871 19 - TSS region transcription start site region 99238
Tssr99239 10 109903875 to 109903900 25 - TSS region transcription start site region 99239
Tssr99240 10 109903911 to 109903927 16 - TSS region transcription start site region 99240
Tssr99241 10 109903952 to 109903966 14 - TSS region transcription start site region 99241
Tssr99242 10 109904012 to 109904022 10 - TSS region transcription start site region 99242
Tssr99243 10 109986532 to 109986581 49 - TSS region transcription start site region 99243
Tssr99244 10 110000902 to 110000913 11 - TSS region transcription start site region 99244
Tssr99245 10 110000934 to 110000943 9 - TSS region transcription start site region 99245
Gm3871 10 110003891 to 110013355 9464 unclassified gene predicted gene 3871
Gm36935 10 110037488 to 110037779 291 - unclassified gene predicted gene, 36935