Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:10843098-14894743

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342 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Grm1 10 10686059 to 11082356 396297 - protein coding gene glutamate receptor, metabotropic 1
Cpgi1293 10 10936334 to 10936574 240 CpG island CpG island 1293
Gm48406 10 11035916 to 11036144 228 + pseudogene predicted gene, 48406
Tssr96696 10 11045585 to 11045596 11 - TSS region transcription start site region 96696
Cpgi1294 10 11080228 to 11080854 626 CpG island CpG island 1294
Tssr96697 10 11080987 to 11081023 36 - TSS region transcription start site region 96697
Tssr96698 10 11081092 to 11081132 40 - TSS region transcription start site region 96698
Cpgi1295 10 11081577 to 11081954 377 CpG island CpG island 1295
Tssr96699 10 11082287 to 11082372 85 - TSS region transcription start site region 96699
Cpgi1296 10 11149164 to 11150084 920 CpG island CpG island 1296
Tssr92350 10 11149387 to 11149400 13 + TSS region transcription start site region 92350
Tssr92351 10 11149406 to 11149417 11 + TSS region transcription start site region 92351
Shprh 10 11149427 to 11217595 68168 + protein coding gene SNF2 histone linker PHD RING helicase
Tssr92352 10 11149449 to 11149513 64 + TSS region transcription start site region 92352
Gm16577 10 11212280 to 11212979 699 - antisense lncRNA gene predicted gene 16577
4930432B10Rik 10 11244790 to 11281221 36431 - bidirectional promoter lncRNA gene RIKEN cDNA 4930432B10 gene
Tssr96700 10 11280360 to 11280361 1 - TSS region transcription start site region 96700
Cpgi1297 10 11280533 to 11282123 1590 CpG island CpG island 1297
Tssr92353 10 11281025 to 11281041 16 + TSS region transcription start site region 92353
Tssr96701 10 11281191 to 11281248 57 - TSS region transcription start site region 96701
Tssr92354 10 11281304 to 11281357 53 + TSS region transcription start site region 92354
Fbxo30 10 11281330 to 11297969 16639 + protein coding gene F-box protein 30
Tssr92355 10 11281360 to 11281383 23 + TSS region transcription start site region 92355
Tssr92356 10 11281553 to 11281560 7 + TSS region transcription start site region 92356
Tssr92357 10 11281583 to 11281620 37 + TSS region transcription start site region 92357
Tssr92358 10 11283214 to 11283218 4 + TSS region transcription start site region 92358
Tssr92359 10 11285004 to 11285008 4 + TSS region transcription start site region 92359
Tssr92360 10 11286234 to 11286237 3 + TSS region transcription start site region 92360
Tssr92361 10 11323419 to 11323424 5 + TSS region transcription start site region 92361
Gm48666 10 11330137 to 11330415 278 - pseudogene predicted gene, 48666
Gm25979 10 11330489 to 11330626 137 - snoRNA gene predicted gene, 25979
Cpgi1298 10 11343105 to 11344046 941 CpG island CpG island 1298
Tssr92362 10 11343387 to 11343506 119 + TSS region transcription start site region 92362
Epm2a 10 11343445 to 11457477 114032 + protein coding gene epilepsy, progressive myoclonic epilepsy, type 2 gene alpha
Tssr92363 10 11356123 to 11356128 5 + TSS region transcription start site region 92363
Rpl17-ps11 10 11386881 to 11387604 723 - pseudogene ribosomal protein L17, pseudogene 11
Cpgi1299 10 11491974 to 11492189 215 CpG island CpG island 1299
Tssr96702 10 11492001 to 11492013 12 - TSS region transcription start site region 96702
Tssr96703 10 11492109 to 11492126 17 - TSS region transcription start site region 96703
Tssr92364 10 11492125 to 11492146 21 + TSS region transcription start site region 92364
Tssr96704 10 11492174 to 11492178 4 - TSS region transcription start site region 96704
Gm48679 10 11505296 to 11505933 637 + pseudogene predicted gene, 48679
Gm48680 10 11580086 to 11587244 7158 + lincRNA gene predicted gene, 48680
Gm9797 10 11609223 to 11609835 612 + pseudogene predicted pseudogene 9797
Tssr92365 10 11609256 to 11609269 13 + TSS region transcription start site region 92365
Xiaf3 10 11642896 to 53772211 42129315 heritable phenotypic marker X inactivation autosomal factor 3
D10Mit80 10 11642896 to 11643049 153 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 80
Gm22546 10 11648005 to 11648134 129 + snoRNA gene predicted gene, 22546
D10Mit79 10 11800265 to 11800463 198 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 79
Gm48697 10 11824413 to 11841931 17518 - lincRNA gene predicted gene, 48697
D10Mit154 10 11827495 to 11827625 130 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 154
Gm48698 10 11838623 to 11838895 272 - pseudogene predicted gene, 48698
Tssr96705 10 11869254 to 11869300 46 - TSS region transcription start site region 96705
Gm22194 10 11940973 to 11941067 94 + miRNA gene predicted gene, 22194
Gm25011 10 11959880 to 11960005 125 + snoRNA gene predicted gene, 25011
D10Mit153 10 11962879 to 11963028 149 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 153
Gm48721 10 12002790 to 12009771 6981 - lincRNA gene predicted gene, 48721
Gm48722 10 12020860 to 12031440 10580 - lincRNA gene predicted gene, 48722
Gm40601 10 12058648 to 12088407 29759 + lncRNA gene predicted gene, 40601
D10Mit152 10 12183301 to 12183450 149 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 152
D10Mit182 10 12197717 to 12197865 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 182
Gm48723 10 12323421 to 12324661 1240 - lincRNA gene predicted gene, 48723
Gm48724 10 12324822 to 12329224 4402 - lincRNA gene predicted gene, 48724
Gm23680 10 12363410 to 12363573 163 + snRNA gene predicted gene, 23680
Gm25139 10 12368623 to 12368832 209 + snoRNA gene predicted gene, 25139
Utrn 10 12382188 to 12869365 487177 - protein coding gene utrophin
Tssr96706 10 12383864 to 12383868 4 - TSS region transcription start site region 96706
Tssr96707 10 12406852 to 12406856 4 - TSS region transcription start site region 96707
Gm48798 10 12420804 to 12421596 792 - unclassified gene predicted gene, 48798
Tssr96708 10 12445282 to 12445285 3 - TSS region transcription start site region 96708
Tssr96709 10 12548494 to 12548521 27 - TSS region transcription start site region 96709
Tssr96710 10 12548730 to 12548775 45 - TSS region transcription start site region 96710
Tssr96711 10 12548886 to 12548914 28 - TSS region transcription start site region 96711
Tssr96712 10 12586297 to 12586327 30 - TSS region transcription start site region 96712
Tssr92366 10 12608918 to 12608925 7 + TSS region transcription start site region 92366
Tssr96713 10 12614560 to 12614572 12 - TSS region transcription start site region 96713
Tssr96714 10 12614597 to 12614617 20 - TSS region transcription start site region 96714
Tssr96715 10 12614687 to 12614700 13 - TSS region transcription start site region 96715
Tssr96716 10 12615033 to 12615069 36 - TSS region transcription start site region 96716
Tssr96717 10 12634077 to 12634123 46 - TSS region transcription start site region 96717
Gm23044 10 12793875 to 12793974 99 - snRNA gene predicted gene, 23044
Tssr96718 10 12813540 to 12813590 50 - TSS region transcription start site region 96718
Tssr96719 10 12813601 to 12813612 11 - TSS region transcription start site region 96719
D10Mit246 10 12821978 to 12822176 198 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 246
Tssr96720 10 12822170 to 12822178 8 - TSS region transcription start site region 96720
Tssr96721 10 12826930 to 12826976 46 - TSS region transcription start site region 96721
Tssr96722 10 12827290 to 12827307 17 - TSS region transcription start site region 96722
D10Mit1.1 10 12828191 to 12828302 111 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 1.1
Hrtq3 10 12828307 to 84243920 71415613 QTL heart weight QTL 3
Egq7 10 12828307 to 84243920 71415613 QTL early growth QTL 7
D10Mit1 10 12828307 to 12828408 101 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 1
W3q11 10 12828307 to 84243920 71415613 QTL weight 3 weeks QTL 11
W10q5 10 12828307 to 84243920 71415613 QTL weight 10 weeks QTL 5
Scfpq1 10 12828307 to 84243920 71415613 QTL subcutaneous fat pad percentage QTL 1
Kidpq2 10 12828307 to 84243920 71415613 QTL kidney weight percentage QTL 2
W6q6 10 12828307 to 84243920 71415613 QTL weight 6 weeks QTL 6
Lvrq4 10 12828307 to 84243920 71415613 QTL liver weight QTL 4
Tssr92367 10 12846012 to 12846014 2 + TSS region transcription start site region 92367
Gm7525 10 12846088 to 12846541 453 + pseudogene predicted gene 7525
Cpgi1300 10 12867514 to 12867729 215 CpG island CpG island 1300
Cpgi1301 10 12868098 to 12869743 1645 CpG island CpG island 1301
Tssr96723 10 12868174 to 12868187 13 - TSS region transcription start site region 96723
Tssr96724 10 12868190 to 12868227 37 - TSS region transcription start site region 96724
Tssr96725 10 12868290 to 12868304 14 - TSS region transcription start site region 96725
Tssr92368 10 12868401 to 12868432 31 + TSS region transcription start site region 92368
Tssr92369 10 12868967 to 12868981 14 + TSS region transcription start site region 92369
Tssr96726 10 12869084 to 12869137 53 - TSS region transcription start site region 96726
Tssr96727 10 12869144 to 12869222 78 - TSS region transcription start site region 96727
Tssr3138 10 12869442 to 12869487 45 - TSS region transcription start site region 3138
Tssr96728 10 12869489 to 12869517 28 - TSS region transcription start site region 96728
Tssr96729 10 12869630 to 12869641 11 - TSS region transcription start site region 96729
Tssr96730 10 12915478 to 12915493 15 - TSS region transcription start site region 96730
B230208H11Rik 10 12916648 to 12923090 6442 - lincRNA gene RIKEN cDNA B230208H11 gene
Cpgi1302 10 12922413 to 12923285 872 CpG island CpG island 1302
n-TLtaa3 10 12922571 to 12922653 82 - tRNA gene nuclear encoded tRNA leucine 3 (anticodon TAA)
Tssr96731 10 12923039 to 12923073 34 - TSS region transcription start site region 96731
Tssr96732 10 12923075 to 12923080 5 - TSS region transcription start site region 96732
Tssr96733 10 12923103 to 12923143 40 - TSS region transcription start site region 96733
Tssr96734 10 12929868 to 12929873 5 - TSS region transcription start site region 96734
Stx11 10 12939983 to 12964498 24515 - protein coding gene syntaxin 11
Cpgi1303 10 12941049 to 12941956 907 CpG island CpG island 1303
Tssr92370 10 12956061 to 12956075 14 + TSS region transcription start site region 92370
Tssr92371 10 12963519 to 12963523 4 + TSS region transcription start site region 92371
Tssr96735 10 12963865 to 12963873 8 - TSS region transcription start site region 96735
Cpgi1304 10 12963936 to 12964850 914 CpG island CpG island 1304
Tssr96736 10 12964211 to 12964245 34 - TSS region transcription start site region 96736
Tssr96737 10 12964252 to 12964278 26 - TSS region transcription start site region 96737
Tssr96738 10 12964441 to 12964472 31 - TSS region transcription start site region 96738
Tssr96739 10 12964488 to 12964515 27 - TSS region transcription start site region 96739
Tssr96740 10 12974682 to 12974709 27 - TSS region transcription start site region 96740
Tssr92372 10 12974805 to 12974819 14 + TSS region transcription start site region 92372
Tssr96741 10 12975595 to 12975604 9 - TSS region transcription start site region 96741
Tssr92373 10 12975703 to 12975714 11 + TSS region transcription start site region 92373
Tssr92374 10 12976229 to 12976251 22 + TSS region transcription start site region 92374
Tssr92375 10 12976318 to 12976327 9 + TSS region transcription start site region 92375
Cpgi1305 10 12995599 to 12995863 264 CpG island CpG island 1305
Bmiq9 10 13000000 to 25000000 12000000 QTL body mass index QTL 9
Cpgi1306 10 13008267 to 13009137 870 CpG island CpG island 1306
Tssr92376 10 13008423 to 13008437 14 + TSS region transcription start site region 92376
Tssr92377 10 13008442 to 13008519 77 + TSS region transcription start site region 92377
Sf3b5 10 13008450 to 13009183 733 + protein coding gene splicing factor 3b, subunit 5
Tssr92378 10 13008534 to 13008547 13 + TSS region transcription start site region 92378
Gm47691 10 13043097 to 13051385 8288 - lincRNA gene predicted gene, 47691
Tssr96742 10 13060385 to 13060400 15 - TSS region transcription start site region 96742
Tssr96743 10 13060425 to 13060432 7 - TSS region transcription start site region 96743
Tssr92379 10 13060529 to 13060538 9 + TSS region transcription start site region 92379
Tssr92380 10 13060699 to 13060723 24 + TSS region transcription start site region 92380
Gm40602 10 13060724 to 13084712 23988 + lncRNA gene predicted gene, 40602
Cpgi1307 10 13060733 to 13061341 608 CpG island CpG island 1307
Cpgi1308 10 13090345 to 13091351 1006 CpG island CpG island 1308
Plagl1 10 13090788 to 13131694 40906 + protein coding gene pleiomorphic adenoma gene-like 1
Tssr92381 10 13090825 to 13090843 18 + TSS region transcription start site region 92381
Hymai 10 13090845 to 13095900 5055 + lncRNA gene hydatidiform mole associated and imprinted transcript
Gm27741 10 13091581 to 13091817 236 - unclassified non-coding RNA gene predicted gene, 27741
Tssr92382 10 13108818 to 13108822 4 + TSS region transcription start site region 92382
Tssr92383 10 13109390 to 13109393 3 + TSS region transcription start site region 92383
2610311E24Rik 10 13115489 to 13116143 654 unclassified non-coding RNA gene RIKEN cDNA 2610311E24 gene
Tssr92384 10 13124951 to 13124965 14 + TSS region transcription start site region 92384
Cpgi1309 10 13127202 to 13127522 320 CpG island CpG island 1309
Tssr92385 10 13129017 to 13129051 34 + TSS region transcription start site region 92385
Tssr92386 10 13129575 to 13129584 9 + TSS region transcription start site region 92386
Tssr92387 10 13129825 to 13129856 31 + TSS region transcription start site region 92387
Tssr92388 10 13130023 to 13130059 36 + TSS region transcription start site region 92388
Tssr92389 10 13130316 to 13130337 21 + TSS region transcription start site region 92389
Tssr92390 10 13130593 to 13130639 46 + TSS region transcription start site region 92390
Zc2hc1b 10 13149644 to 13178038 28394 - protein coding gene zinc finger, C2HC-type containing 1B
Tssr96744 10 13177989 to 13178004 15 - TSS region transcription start site region 96744
Ltv1 10 13178597 to 13193137 14540 - protein coding gene LTV1 ribosome biogenesis factor
Tssr96745 10 13182411 to 13182444 33 - TSS region transcription start site region 96745
Cpgi1310 10 13192720 to 13193332 612 CpG island CpG island 1310
Tssr96746 10 13192730 to 13192800 70 - TSS region transcription start site region 96746
Tssr96747 10 13193069 to 13193076 7 - TSS region transcription start site region 96747
Tssr96748 10 13193096 to 13193155 59 - TSS region transcription start site region 96748
Tssr96749 10 13193156 to 13193167 11 - TSS region transcription start site region 96749
Gm47402 10 13205226 to 13205645 419 + pseudogene predicted gene, 47402
Phactr2 10 13207717 to 13474412 266695 - protein coding gene phosphatase and actin regulator 2
Tssr96750 10 13209934 to 13209937 3 - TSS region transcription start site region 96750
Gm46211 10 13224869 to 13227608 2739 + lncRNA gene predicted gene, 46211
Tssr96751 10 13292038 to 13292071 33 - TSS region transcription start site region 96751
Tssr96752 10 13301107 to 13301116 9 - TSS region transcription start site region 96752
Tssr96753 10 13303970 to 13303977 7 - TSS region transcription start site region 96753
Tssr92391 10 13304114 to 13304127 13 + TSS region transcription start site region 92391
Tssr96754 10 13304719 to 13304754 35 - TSS region transcription start site region 96754
Tssr92392 10 13304957 to 13304982 25 + TSS region transcription start site region 92392
Cpgi1311 10 13323827 to 13324499 672 CpG island CpG island 1311
Tssr96755 10 13324221 to 13324242 21 - TSS region transcription start site region 96755
Tssr96756 10 13324250 to 13324318 68 - TSS region transcription start site region 96756
Tssr96757 10 13335505 to 13335514 9 - TSS region transcription start site region 96757
Tssr96758 10 13375058 to 13375075 17 - TSS region transcription start site region 96758
Tssr96759 10 13375358 to 13375374 16 - TSS region transcription start site region 96759
Tssr96760 10 13388755 to 13388774 19 - TSS region transcription start site region 96760
Tssr96761 10 13388830 to 13388845 15 - TSS region transcription start site region 96761
Cpgi1312 10 13420258 to 13420531 273 CpG island CpG island 1312
D10Mit211 10 13427317 to 13427431 114 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 211
Tssr96762 10 13428712 to 13428729 17 - TSS region transcription start site region 96762
Tssr96763 10 13443682 to 13443694 12 - TSS region transcription start site region 96763
Tssr3139 10 13446062 to 13446104 42 - TSS region transcription start site region 3139
Tssr96764 10 13446108 to 13446134 26 - TSS region transcription start site region 96764
Tssr96765 10 13446146 to 13446155 9 - TSS region transcription start site region 96765
Cpgi1313 10 13473472 to 13474773 1301 CpG island CpG island 1313