Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:108348897-108709364

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28 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pawr 10 108332121 to 108414240 82119 + protein coding gene PRKC, apoptosis, WT1, regulator
Gm23105 10 108363665 to 108363798 133 + snoRNA gene predicted gene, 23105
Tssr95677 10 108414485 to 108414491 6 + TSS region transcription start site region 95677
Gm25591 10 108428067 to 108428160 93 + miRNA gene predicted gene, 25591
Tssr95678 10 108434176 to 108434194 18 + TSS region transcription start site region 95678
Gm36283 10 108436388 to 108453296 16908 + lincRNA gene predicted gene, 36283
Tssr95679 10 108436692 to 108436695 3 + TSS region transcription start site region 95679
Tssr99205 10 108443048 to 108443051 3 - TSS region transcription start site region 99205
Gm36440 10 108444318 to 108444806 488 - lncRNA gene predicted gene, 36440
Tssr99206 10 108445019 to 108445027 8 - TSS region transcription start site region 99206
Gm36601 10 108455756 to 108512067 56311 + lncRNA gene predicted gene, 36601
Gm47466 10 108482650 to 108482991 341 + pseudogene predicted gene, 47466
Syt1 10 108497650 to 109010978 513328 - protein coding gene synaptotagmin I
Tssr99207 10 108498302 to 108498311 9 - TSS region transcription start site region 99207
Tssr99208 10 108500453 to 108500465 12 - TSS region transcription start site region 99208
Tssr99209 10 108500528 to 108500539 11 - TSS region transcription start site region 99209
Cpgi2177 10 108528897 to 108529364 467 CpG island CpG island 2177
Tssr95680 10 108543104 to 108543110 6 + TSS region transcription start site region 95680
A830054O04Rik 10 108545755 to 108547936 2181 unclassified non-coding RNA gene RIKEN cDNA A830054O04 gene
5330428N10Rik 10 108637000 to 108640078 3078 unclassified gene RIKEN cDNA 5330428N10 gene
Tssr99210 10 108642379 to 108642391 12 - TSS region transcription start site region 99210
C030018G05Rik 10 108685012 to 108685794 782 unclassified gene RIKEN cDNA C030018G05 gene
Tssr99211 10 108690212 to 108690216 4 - TSS region transcription start site region 99211
Tssr95681 10 108691021 to 108691032 11 + TSS region transcription start site region 95681
Tssr99212 10 108691139 to 108691149 10 - TSS region transcription start site region 99212
Gm5136 10 108699044 to 108700160 1116 - protein coding gene predicted gene 5136
Tssr99213 10 108699771 to 108699811 40 - TSS region transcription start site region 99213
Tssr99214 10 108700109 to 108700143 34 - TSS region transcription start site region 99214