Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:108158897-108899364

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40754 10 108150495 to 108160437 9942 - lncRNA gene predicted gene, 40754
Cpgi2174 10 108161490 to 108163074 1584 CpG island CpG island 2174
Ppp1r12a 10 108161831 to 108279833 118002 + protein coding gene protein phosphatase 1, regulatory subunit 12A
Tssr95652 10 108162044 to 108162053 9 + TSS region transcription start site region 95652
Tssr95653 10 108162080 to 108162112 32 + TSS region transcription start site region 95653
Tssr95654 10 108162113 to 108162125 12 + TSS region transcription start site region 95654
Tssr95655 10 108162145 to 108162169 24 + TSS region transcription start site region 95655
Tssr95656 10 108162174 to 108162177 3 + TSS region transcription start site region 95656
Tssr95657 10 108162180 to 108162216 36 + TSS region transcription start site region 95657
Tssr95658 10 108162270 to 108162279 9 + TSS region transcription start site region 95658
Tssr95659 10 108162302 to 108162314 12 + TSS region transcription start site region 95659
Tssr95660 10 108162358 to 108162408 50 + TSS region transcription start site region 95660
Tssr95661 10 108177299 to 108177303 4 + TSS region transcription start site region 95661
C430003N24Rik 10 108179805 to 108184915 5110 unclassified gene RIKEN cDNA C430003N24 gene
Tssr95662 10 108230545 to 108230549 4 + TSS region transcription start site region 95662
Tssr95663 10 108259745 to 108259764 19 + TSS region transcription start site region 95663
Tssr95664 10 108259773 to 108259786 13 + TSS region transcription start site region 95664
Tssr95665 10 108260830 to 108260845 15 + TSS region transcription start site region 95665
Cpgi2175 10 108264745 to 108264971 226 CpG island CpG island 2175
Tssr95666 10 108264861 to 108264876 15 + TSS region transcription start site region 95666
Tssr95667 10 108268615 to 108268631 16 + TSS region transcription start site region 95667
Tssr95668 10 108277722 to 108277734 12 + TSS region transcription start site region 95668
Tssr95669 10 108285227 to 108285238 11 + TSS region transcription start site region 95669
Tssr95670 10 108295038 to 108295049 11 + TSS region transcription start site region 95670
Tssr99204 10 108296564 to 108296578 14 - TSS region transcription start site region 99204
Gm40755 10 108322372 to 108332733 10361 - protein coding gene predicted gene, 40755
Cpgi2176 10 108331601 to 108333543 1942 CpG island CpG island 2176
Tssr95671 10 108332112 to 108332159 47 + TSS region transcription start site region 95671
Pawr 10 108332121 to 108414240 82119 + protein coding gene PRKC, apoptosis, WT1, regulator
Tssr95672 10 108332163 to 108332170 7 + TSS region transcription start site region 95672
Tssr95673 10 108332173 to 108332182 9 + TSS region transcription start site region 95673
Tssr95674 10 108332663 to 108332689 26 + TSS region transcription start site region 95674
Tssr95675 10 108332694 to 108332743 49 + TSS region transcription start site region 95675
Tssr95676 10 108333256 to 108333292 36 + TSS region transcription start site region 95676
Gm23105 10 108363665 to 108363798 133 + snoRNA gene predicted gene, 23105
Tssr95677 10 108414485 to 108414491 6 + TSS region transcription start site region 95677
Gm25591 10 108428067 to 108428160 93 + miRNA gene predicted gene, 25591
Tssr95678 10 108434176 to 108434194 18 + TSS region transcription start site region 95678
Gm36283 10 108436388 to 108453296 16908 + lincRNA gene predicted gene, 36283
Tssr95679 10 108436692 to 108436695 3 + TSS region transcription start site region 95679
Tssr99205 10 108443048 to 108443051 3 - TSS region transcription start site region 99205
Gm36440 10 108444318 to 108444806 488 - lncRNA gene predicted gene, 36440
Tssr99206 10 108445019 to 108445027 8 - TSS region transcription start site region 99206
Gm36601 10 108455756 to 108512067 56311 + lncRNA gene predicted gene, 36601
Gm47466 10 108482650 to 108482991 341 + pseudogene predicted gene, 47466
Syt1 10 108497650 to 109010978 513328 - protein coding gene synaptotagmin I
Tssr99207 10 108498302 to 108498311 9 - TSS region transcription start site region 99207
Tssr99208 10 108500453 to 108500465 12 - TSS region transcription start site region 99208
Tssr99209 10 108500528 to 108500539 11 - TSS region transcription start site region 99209
Cpgi2177 10 108528897 to 108529364 467 CpG island CpG island 2177
Tssr95680 10 108543104 to 108543110 6 + TSS region transcription start site region 95680
A830054O04Rik 10 108545755 to 108547936 2181 unclassified non-coding RNA gene RIKEN cDNA A830054O04 gene
5330428N10Rik 10 108637000 to 108640078 3078 unclassified gene RIKEN cDNA 5330428N10 gene
Tssr99210 10 108642379 to 108642391 12 - TSS region transcription start site region 99210
C030018G05Rik 10 108685012 to 108685794 782 unclassified gene RIKEN cDNA C030018G05 gene
Tssr99211 10 108690212 to 108690216 4 - TSS region transcription start site region 99211
Tssr95681 10 108691021 to 108691032 11 + TSS region transcription start site region 95681
Tssr99212 10 108691139 to 108691149 10 - TSS region transcription start site region 99212
Gm5136 10 108699044 to 108700160 1116 - protein coding gene predicted gene 5136
Tssr99213 10 108699771 to 108699811 40 - TSS region transcription start site region 99213
Tssr99214 10 108700109 to 108700143 34 - TSS region transcription start site region 99214
Tssr99215 10 108710819 to 108710832 13 - TSS region transcription start site region 99215
C030044C18Rik 10 108711506 to 108712274 768 unclassified gene RIKEN cDNA C030044C18 gene
Tssr95682 10 108716563 to 108716569 6 + TSS region transcription start site region 95682
Tssr99216 10 108719477 to 108719513 36 - TSS region transcription start site region 99216
2900074G08Rik 10 108773997 to 108774545 548 unclassified gene RIKEN cDNA 2900074G08 gene
Gm47472 10 108778311 to 108782873 4562 + unclassified gene predicted gene, 47472
Tssr99217 10 108796901 to 108796904 3 - TSS region transcription start site region 99217
Tssr99218 10 108799859 to 108799864 5 - TSS region transcription start site region 99218
Tssr99219 10 108879746 to 108879751 5 - TSS region transcription start site region 99219
Tssr99220 10 108879772 to 108879783 11 - TSS region transcription start site region 99220
Tssr99221 10 108894894 to 108894905 11 - TSS region transcription start site region 99221