Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:107739745-108789971

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Otogl 10 107760531 to 107912134 151603 - protein coding gene otogelin-like
Tssr99196 10 107876535 to 107876536 1 - TSS region transcription start site region 99196
Tssr99197 10 107912253 to 107912262 9 - TSS region transcription start site region 99197
Tssr99198 10 107912277 to 107912284 7 - TSS region transcription start site region 99198
Tssr99199 10 107912322 to 107912334 12 - TSS region transcription start site region 99199
Tssr99200 10 107912336 to 107912357 21 - TSS region transcription start site region 99200
Tssr99201 10 107912362 to 107912367 5 - TSS region transcription start site region 99201
Tssr99202 10 107912374 to 107912384 10 - TSS region transcription start site region 99202
Tssr99203 10 107912439 to 107912444 5 - TSS region transcription start site region 99203
Gm29685 10 107946645 to 107977832 31187 + lincRNA gene predicted gene, 29685
D10Ertd43e 10 108089921 to 108090127 206 DNA segment DNA segment, Chr 10, ERATO Doi 43, expressed
Tssr95651 10 108131087 to 108131112 25 + TSS region transcription start site region 95651
Gm47999 10 108141688 to 108142432 744 - pseudogene predicted gene, 47999
Gm40754 10 108150495 to 108160437 9942 - lncRNA gene predicted gene, 40754
Cpgi2173 10 108155057 to 108155306 249 CpG island CpG island 2173
Cpgi2174 10 108161490 to 108163074 1584 CpG island CpG island 2174
Ppp1r12a 10 108161831 to 108279833 118002 + protein coding gene protein phosphatase 1, regulatory subunit 12A
Tssr95652 10 108162044 to 108162053 9 + TSS region transcription start site region 95652
Tssr95653 10 108162080 to 108162112 32 + TSS region transcription start site region 95653
Tssr95654 10 108162113 to 108162125 12 + TSS region transcription start site region 95654
Tssr95655 10 108162145 to 108162169 24 + TSS region transcription start site region 95655
Tssr95656 10 108162174 to 108162177 3 + TSS region transcription start site region 95656
Tssr95657 10 108162180 to 108162216 36 + TSS region transcription start site region 95657
Tssr95658 10 108162270 to 108162279 9 + TSS region transcription start site region 95658
Tssr95659 10 108162302 to 108162314 12 + TSS region transcription start site region 95659
Tssr95660 10 108162358 to 108162408 50 + TSS region transcription start site region 95660
Tssr95661 10 108177299 to 108177303 4 + TSS region transcription start site region 95661
C430003N24Rik 10 108179805 to 108184915 5110 unclassified gene RIKEN cDNA C430003N24 gene
Tssr95662 10 108230545 to 108230549 4 + TSS region transcription start site region 95662
Tssr95663 10 108259745 to 108259764 19 + TSS region transcription start site region 95663
Tssr95664 10 108259773 to 108259786 13 + TSS region transcription start site region 95664
Tssr95665 10 108260830 to 108260845 15 + TSS region transcription start site region 95665
Cpgi2175 10 108264745 to 108264971 226 CpG island CpG island 2175
Tssr95666 10 108264861 to 108264876 15 + TSS region transcription start site region 95666
Tssr95667 10 108268615 to 108268631 16 + TSS region transcription start site region 95667
Tssr95668 10 108277722 to 108277734 12 + TSS region transcription start site region 95668
Tssr95669 10 108285227 to 108285238 11 + TSS region transcription start site region 95669
Tssr95670 10 108295038 to 108295049 11 + TSS region transcription start site region 95670
Tssr99204 10 108296564 to 108296578 14 - TSS region transcription start site region 99204
Gm40755 10 108322372 to 108332733 10361 - protein coding gene predicted gene, 40755
Cpgi2176 10 108331601 to 108333543 1942 CpG island CpG island 2176
Tssr95671 10 108332112 to 108332159 47 + TSS region transcription start site region 95671
Pawr 10 108332121 to 108414240 82119 + protein coding gene PRKC, apoptosis, WT1, regulator
Tssr95672 10 108332163 to 108332170 7 + TSS region transcription start site region 95672
Tssr95673 10 108332173 to 108332182 9 + TSS region transcription start site region 95673
Tssr95674 10 108332663 to 108332689 26 + TSS region transcription start site region 95674
Tssr95675 10 108332694 to 108332743 49 + TSS region transcription start site region 95675
Tssr95676 10 108333256 to 108333292 36 + TSS region transcription start site region 95676
Gm23105 10 108363665 to 108363798 133 + snoRNA gene predicted gene, 23105
Tssr95677 10 108414485 to 108414491 6 + TSS region transcription start site region 95677
Gm25591 10 108428067 to 108428160 93 + miRNA gene predicted gene, 25591
Tssr95678 10 108434176 to 108434194 18 + TSS region transcription start site region 95678
Gm36283 10 108436388 to 108453296 16908 + lincRNA gene predicted gene, 36283
Tssr95679 10 108436692 to 108436695 3 + TSS region transcription start site region 95679
Tssr99205 10 108443048 to 108443051 3 - TSS region transcription start site region 99205
Gm36440 10 108444318 to 108444806 488 - lncRNA gene predicted gene, 36440
Tssr99206 10 108445019 to 108445027 8 - TSS region transcription start site region 99206
Gm36601 10 108455756 to 108512067 56311 + lncRNA gene predicted gene, 36601
Gm47466 10 108482650 to 108482991 341 + pseudogene predicted gene, 47466
Syt1 10 108497650 to 109010978 513328 - protein coding gene synaptotagmin I
Tssr99207 10 108498302 to 108498311 9 - TSS region transcription start site region 99207
Tssr99208 10 108500453 to 108500465 12 - TSS region transcription start site region 99208
Tssr99209 10 108500528 to 108500539 11 - TSS region transcription start site region 99209
Cpgi2177 10 108528897 to 108529364 467 CpG island CpG island 2177
Tssr95680 10 108543104 to 108543110 6 + TSS region transcription start site region 95680
A830054O04Rik 10 108545755 to 108547936 2181 unclassified non-coding RNA gene RIKEN cDNA A830054O04 gene
5330428N10Rik 10 108637000 to 108640078 3078 unclassified gene RIKEN cDNA 5330428N10 gene
Tssr99210 10 108642379 to 108642391 12 - TSS region transcription start site region 99210
C030018G05Rik 10 108685012 to 108685794 782 unclassified gene RIKEN cDNA C030018G05 gene
Tssr99211 10 108690212 to 108690216 4 - TSS region transcription start site region 99211
Tssr95681 10 108691021 to 108691032 11 + TSS region transcription start site region 95681
Tssr99212 10 108691139 to 108691149 10 - TSS region transcription start site region 99212
Gm5136 10 108699044 to 108700160 1116 - protein coding gene predicted gene 5136
Tssr99213 10 108699771 to 108699811 40 - TSS region transcription start site region 99213
Tssr99214 10 108700109 to 108700143 34 - TSS region transcription start site region 99214
Tssr99215 10 108710819 to 108710832 13 - TSS region transcription start site region 99215
C030044C18Rik 10 108711506 to 108712274 768 unclassified gene RIKEN cDNA C030044C18 gene
Tssr95682 10 108716563 to 108716569 6 + TSS region transcription start site region 95682
Tssr99216 10 108719477 to 108719513 36 - TSS region transcription start site region 99216
2900074G08Rik 10 108773997 to 108774545 548 unclassified gene RIKEN cDNA 2900074G08 gene
Gm47472 10 108778311 to 108782873 4562 + unclassified gene predicted gene, 47472