Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:106680406-108280534

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ppfia2 10 106470270 to 106933468 463198 + protein coding gene protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
Tssr3344 10 106723611 to 106723613 2 + TSS region transcription start site region 3344
Gm17848 10 106753812 to 106754906 1094 - pseudogene predicted gene, 17848
Tssr95632 10 106879005 to 106879012 7 + TSS region transcription start site region 95632
Tssr95633 10 106879293 to 106879305 12 + TSS region transcription start site region 95633
Tssr95634 10 106879340 to 106879353 13 + TSS region transcription start site region 95634
Tssr95635 10 106879388 to 106879395 7 + TSS region transcription start site region 95635
Tssr95636 10 106879417 to 106879429 12 + TSS region transcription start site region 95636
Tssr95637 10 106879815 to 106879832 17 + TSS region transcription start site region 95637
Tssr95638 10 106879871 to 106879901 30 + TSS region transcription start site region 95638
Tssr95639 10 106879957 to 106879968 11 + TSS region transcription start site region 95639
Tssr95640 10 106879994 to 106880006 12 + TSS region transcription start site region 95640
B230114P17Rik 10 106933516 to 106935951 2435 unclassified gene RIKEN cDNA B230114P17 gene
Acss3 10 106936164 to 107123664 187500 - protein coding gene acyl-CoA synthetase short-chain family member 3
Tssr95641 10 106949202 to 106949208 6 + TSS region transcription start site region 95641
Gm19007 10 106949297 to 106950170 873 + pseudogene predicted gene, 19007
E030002G19Rik 10 107039691 to 107043188 3497 unclassified gene RIKEN cDNA E030002G19 gene
Gm18040 10 107058523 to 107059349 826 - pseudogene predicted gene, 18040
Gm19181 10 107061044 to 107061983 939 - pseudogene predicted gene, 19181
Fcsa3 10 107091790 to 107091893 103 QTL femoral cross-sectional area 3
D10Mit162 10 107091790 to 107091893 103 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 162
Tssr99182 10 107123585 to 107123673 88 - TSS region transcription start site region 99182
Tssr99183 10 107123772 to 107123794 22 - TSS region transcription start site region 99183
Gm24745 10 107136974 to 107137058 84 + snoRNA gene predicted gene, 24745
Gm29674 10 107200132 to 107205699 5567 - lincRNA gene predicted gene, 29674
Tssr95642 10 107271328 to 107271364 36 + TSS region transcription start site region 95642
Cpgi2171 10 107271404 to 107272785 1381 CpG island CpG island 2171
Tssr95643 10 107271617 to 107271696 79 + TSS region transcription start site region 95643
Lin7a 10 107271686 to 107421474 149788 + protein coding gene lin-7 homolog A (C. elegans)
Tssr95644 10 107271697 to 107271720 23 + TSS region transcription start site region 95644
Tssr95645 10 107271827 to 107271850 23 + TSS region transcription start site region 95645
Tssr95646 10 107271868 to 107271888 20 + TSS region transcription start site region 95646
Tssr95647 10 107271890 to 107271901 11 + TSS region transcription start site region 95647
Tssr99184 10 107272705 to 107272736 31 - TSS region transcription start site region 99184
3110033O22Rik 10 107335769 to 107335946 177 unclassified gene RIKEN cDNA 3110033O22 gene
Tssr95648 10 107349906 to 107349918 12 + TSS region transcription start site region 95648
Tssr95649 10 107421232 to 107421238 6 + TSS region transcription start site region 95649
Gm38117 10 107436421 to 107437359 938 - unclassified gene predicted gene, 38117
Gm44403 10 107480406 to 107480534 128 + miRNA gene predicted gene, 44403
Myf5 10 107482908 to 107486134 3226 - protein coding gene myogenic factor 5
Tssr99185 10 107483792 to 107483796 4 - TSS region transcription start site region 99185
Ogrq4 10 107484128 to 92333194 -15150934 QTL overall growth rate QTL 4
Cpgi2172 10 107485562 to 107485823 261 CpG island CpG island 2172
Tssr99186 10 107486077 to 107486090 13 - TSS region transcription start site region 99186
Myf6 10 107492860 to 107494729 1869 - protein coding gene myogenic factor 6
Tssr99187 10 107494719 to 107494742 23 - TSS region transcription start site region 99187
Tssr99188 10 107494747 to 107494761 14 - TSS region transcription start site region 99188
Tssr99189 10 107494783 to 107494795 12 - TSS region transcription start site region 99189
Tssr95650 10 107495263 to 107495296 33 + TSS region transcription start site region 95650
Gm36177 10 107495268 to 107659403 164135 + lncRNA gene predicted gene, 36177
Ptprq 10 107517049 to 107720051 203002 - protein coding gene protein tyrosine phosphatase, receptor type, Q
Tssr99190 10 107547089 to 107547093 4 - TSS region transcription start site region 99190
D10Mit163 10 107606690 to 107606777 87 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 163
D10Mit163.2 10 107606901 to 107607024 123 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 163.2
Tssr99191 10 107643543 to 107643557 14 - TSS region transcription start site region 99191
Tssr99192 10 107643562 to 107643571 9 - TSS region transcription start site region 99192
Tssr3345 10 107705216 to 107705219 3 + TSS region transcription start site region 3345
Tssr99193 10 107719893 to 107719900 7 - TSS region transcription start site region 99193
Tssr99194 10 107719907 to 107719957 50 - TSS region transcription start site region 99194
Tssr3346 10 107719975 to 107719978 3 - TSS region transcription start site region 3346
Tssr99195 10 107719978 to 107719989 11 - TSS region transcription start site region 99195
Otogl 10 107760531 to 107912134 151603 - protein coding gene otogelin-like
Tssr99196 10 107876535 to 107876536 1 - TSS region transcription start site region 99196
Tssr99197 10 107912253 to 107912262 9 - TSS region transcription start site region 99197
Tssr99198 10 107912277 to 107912284 7 - TSS region transcription start site region 99198
Tssr99199 10 107912322 to 107912334 12 - TSS region transcription start site region 99199
Tssr99200 10 107912336 to 107912357 21 - TSS region transcription start site region 99200
Tssr99201 10 107912362 to 107912367 5 - TSS region transcription start site region 99201
Tssr99202 10 107912374 to 107912384 10 - TSS region transcription start site region 99202
Tssr99203 10 107912439 to 107912444 5 - TSS region transcription start site region 99203
Gm29685 10 107946645 to 107977832 31187 + lincRNA gene predicted gene, 29685
D10Ertd43e 10 108089921 to 108090127 206 DNA segment DNA segment, Chr 10, ERATO Doi 43, expressed
Tssr95651 10 108131087 to 108131112 25 + TSS region transcription start site region 95651
Gm47999 10 108141688 to 108142432 744 - pseudogene predicted gene, 47999
Gm40754 10 108150495 to 108160437 9942 - lncRNA gene predicted gene, 40754
Cpgi2173 10 108155057 to 108155306 249 CpG island CpG island 2173
Cpgi2174 10 108161490 to 108163074 1584 CpG island CpG island 2174
Ppp1r12a 10 108161831 to 108279833 118002 + protein coding gene protein phosphatase 1, regulatory subunit 12A
Tssr95652 10 108162044 to 108162053 9 + TSS region transcription start site region 95652
Tssr95653 10 108162080 to 108162112 32 + TSS region transcription start site region 95653
Tssr95654 10 108162113 to 108162125 12 + TSS region transcription start site region 95654
Tssr95655 10 108162145 to 108162169 24 + TSS region transcription start site region 95655
Tssr95656 10 108162174 to 108162177 3 + TSS region transcription start site region 95656
Tssr95657 10 108162180 to 108162216 36 + TSS region transcription start site region 95657
Tssr95658 10 108162270 to 108162279 9 + TSS region transcription start site region 95658
Tssr95659 10 108162302 to 108162314 12 + TSS region transcription start site region 95659
Tssr95660 10 108162358 to 108162408 50 + TSS region transcription start site region 95660
Tssr95661 10 108177299 to 108177303 4 + TSS region transcription start site region 95661
C430003N24Rik 10 108179805 to 108184915 5110 unclassified gene RIKEN cDNA C430003N24 gene
Tssr95662 10 108230545 to 108230549 4 + TSS region transcription start site region 95662
Tssr95663 10 108259745 to 108259764 19 + TSS region transcription start site region 95663
Tssr95664 10 108259773 to 108259786 13 + TSS region transcription start site region 95664
Tssr95665 10 108260830 to 108260845 15 + TSS region transcription start site region 95665
Cpgi2175 10 108264745 to 108264971 226 CpG island CpG island 2175
Tssr95666 10 108264861 to 108264876 15 + TSS region transcription start site region 95666
Tssr95667 10 108268615 to 108268631 16 + TSS region transcription start site region 95667
Tssr95668 10 108277722 to 108277734 12 + TSS region transcription start site region 95668