Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:106654805-109709915

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176 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ppfia2 10 106470270 to 106933468 463198 + protein coding gene protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
Tssr95631 10 106675813 to 106675814 1 + TSS region transcription start site region 95631
Tssr3344 10 106723611 to 106723613 2 + TSS region transcription start site region 3344
Gm17848 10 106753812 to 106754906 1094 - pseudogene predicted gene, 17848
Tssr95632 10 106879005 to 106879012 7 + TSS region transcription start site region 95632
Tssr95633 10 106879293 to 106879305 12 + TSS region transcription start site region 95633
Tssr95634 10 106879340 to 106879353 13 + TSS region transcription start site region 95634
Tssr95635 10 106879388 to 106879395 7 + TSS region transcription start site region 95635
Tssr95636 10 106879417 to 106879429 12 + TSS region transcription start site region 95636
Tssr95637 10 106879815 to 106879832 17 + TSS region transcription start site region 95637
Tssr95638 10 106879871 to 106879901 30 + TSS region transcription start site region 95638
Tssr95639 10 106879957 to 106879968 11 + TSS region transcription start site region 95639
Tssr95640 10 106879994 to 106880006 12 + TSS region transcription start site region 95640
B230114P17Rik 10 106933516 to 106935951 2435 unclassified gene RIKEN cDNA B230114P17 gene
Acss3 10 106936164 to 107123664 187500 - protein coding gene acyl-CoA synthetase short-chain family member 3
Tssr95641 10 106949202 to 106949208 6 + TSS region transcription start site region 95641
Gm19007 10 106949297 to 106950170 873 + pseudogene predicted gene, 19007
E030002G19Rik 10 107039691 to 107043188 3497 unclassified gene RIKEN cDNA E030002G19 gene
Gm18040 10 107058523 to 107059349 826 - pseudogene predicted gene, 18040
Gm19181 10 107061044 to 107061983 939 - pseudogene predicted gene, 19181
D10Mit162 10 107091790 to 107091893 103 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 162
Fcsa3 10 107091790 to 107091893 103 QTL femoral cross-sectional area 3
Tssr99182 10 107123585 to 107123673 88 - TSS region transcription start site region 99182
Tssr99183 10 107123772 to 107123794 22 - TSS region transcription start site region 99183
Gm24745 10 107136974 to 107137058 84 + snoRNA gene predicted gene, 24745
Gm29674 10 107200132 to 107205699 5567 - lincRNA gene predicted gene, 29674
Tssr95642 10 107271328 to 107271364 36 + TSS region transcription start site region 95642
Cpgi2171 10 107271404 to 107272785 1381 CpG island CpG island 2171
Tssr95643 10 107271617 to 107271696 79 + TSS region transcription start site region 95643
Lin7a 10 107271686 to 107421474 149788 + protein coding gene lin-7 homolog A (C. elegans)
Tssr95644 10 107271697 to 107271720 23 + TSS region transcription start site region 95644
Tssr95645 10 107271827 to 107271850 23 + TSS region transcription start site region 95645
Tssr95646 10 107271868 to 107271888 20 + TSS region transcription start site region 95646
Tssr95647 10 107271890 to 107271901 11 + TSS region transcription start site region 95647
Tssr99184 10 107272705 to 107272736 31 - TSS region transcription start site region 99184
3110033O22Rik 10 107335769 to 107335946 177 unclassified gene RIKEN cDNA 3110033O22 gene
Tssr95648 10 107349906 to 107349918 12 + TSS region transcription start site region 95648
Tssr95649 10 107421232 to 107421238 6 + TSS region transcription start site region 95649
Gm38117 10 107436421 to 107437359 938 - unclassified gene predicted gene, 38117
Gm44403 10 107480406 to 107480534 128 + miRNA gene predicted gene, 44403
Myf5 10 107482908 to 107486134 3226 - protein coding gene myogenic factor 5
Tssr99185 10 107483792 to 107483796 4 - TSS region transcription start site region 99185
Ogrq4 10 107484128 to 92333194 -15150934 QTL overall growth rate QTL 4
Cpgi2172 10 107485562 to 107485823 261 CpG island CpG island 2172
Tssr99186 10 107486077 to 107486090 13 - TSS region transcription start site region 99186
Myf6 10 107492860 to 107494729 1869 - protein coding gene myogenic factor 6
Tssr99187 10 107494719 to 107494742 23 - TSS region transcription start site region 99187
Tssr99188 10 107494747 to 107494761 14 - TSS region transcription start site region 99188
Tssr99189 10 107494783 to 107494795 12 - TSS region transcription start site region 99189
Tssr95650 10 107495263 to 107495296 33 + TSS region transcription start site region 95650
Gm36177 10 107495268 to 107659403 164135 + lncRNA gene predicted gene, 36177
Ptprq 10 107517049 to 107720051 203002 - protein coding gene protein tyrosine phosphatase, receptor type, Q
Tssr99190 10 107547089 to 107547093 4 - TSS region transcription start site region 99190
D10Mit163 10 107606690 to 107606777 87 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 163
D10Mit163.2 10 107606901 to 107607024 123 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 163.2
Tssr99191 10 107643543 to 107643557 14 - TSS region transcription start site region 99191
Tssr99192 10 107643562 to 107643571 9 - TSS region transcription start site region 99192
Tssr3345 10 107705216 to 107705219 3 + TSS region transcription start site region 3345
Tssr99193 10 107719893 to 107719900 7 - TSS region transcription start site region 99193
Tssr99194 10 107719907 to 107719957 50 - TSS region transcription start site region 99194
Tssr3346 10 107719975 to 107719978 3 - TSS region transcription start site region 3346
Tssr99195 10 107719978 to 107719989 11 - TSS region transcription start site region 99195
Otogl 10 107760531 to 107912134 151603 - protein coding gene otogelin-like
Tssr99196 10 107876535 to 107876536 1 - TSS region transcription start site region 99196
Tssr99197 10 107912253 to 107912262 9 - TSS region transcription start site region 99197
Tssr99198 10 107912277 to 107912284 7 - TSS region transcription start site region 99198
Tssr99199 10 107912322 to 107912334 12 - TSS region transcription start site region 99199
Tssr99200 10 107912336 to 107912357 21 - TSS region transcription start site region 99200
Tssr99201 10 107912362 to 107912367 5 - TSS region transcription start site region 99201
Tssr99202 10 107912374 to 107912384 10 - TSS region transcription start site region 99202
Tssr99203 10 107912439 to 107912444 5 - TSS region transcription start site region 99203
Gm29685 10 107946645 to 107977832 31187 + lincRNA gene predicted gene, 29685
D10Ertd43e 10 108089921 to 108090127 206 DNA segment DNA segment, Chr 10, ERATO Doi 43, expressed
Tssr95651 10 108131087 to 108131112 25 + TSS region transcription start site region 95651
Gm47999 10 108141688 to 108142432 744 - pseudogene predicted gene, 47999
Gm40754 10 108150495 to 108160437 9942 - lncRNA gene predicted gene, 40754
Cpgi2173 10 108155057 to 108155306 249 CpG island CpG island 2173
Cpgi2174 10 108161490 to 108163074 1584 CpG island CpG island 2174
Ppp1r12a 10 108161831 to 108279833 118002 + protein coding gene protein phosphatase 1, regulatory subunit 12A
Tssr95652 10 108162044 to 108162053 9 + TSS region transcription start site region 95652
Tssr95653 10 108162080 to 108162112 32 + TSS region transcription start site region 95653
Tssr95654 10 108162113 to 108162125 12 + TSS region transcription start site region 95654
Tssr95655 10 108162145 to 108162169 24 + TSS region transcription start site region 95655
Tssr95656 10 108162174 to 108162177 3 + TSS region transcription start site region 95656
Tssr95657 10 108162180 to 108162216 36 + TSS region transcription start site region 95657
Tssr95658 10 108162270 to 108162279 9 + TSS region transcription start site region 95658
Tssr95659 10 108162302 to 108162314 12 + TSS region transcription start site region 95659
Tssr95660 10 108162358 to 108162408 50 + TSS region transcription start site region 95660
Tssr95661 10 108177299 to 108177303 4 + TSS region transcription start site region 95661
C430003N24Rik 10 108179805 to 108184915 5110 unclassified gene RIKEN cDNA C430003N24 gene
Tssr95662 10 108230545 to 108230549 4 + TSS region transcription start site region 95662
Tssr95663 10 108259745 to 108259764 19 + TSS region transcription start site region 95663
Tssr95664 10 108259773 to 108259786 13 + TSS region transcription start site region 95664
Tssr95665 10 108260830 to 108260845 15 + TSS region transcription start site region 95665
Cpgi2175 10 108264745 to 108264971 226 CpG island CpG island 2175
Tssr95666 10 108264861 to 108264876 15 + TSS region transcription start site region 95666
Tssr95667 10 108268615 to 108268631 16 + TSS region transcription start site region 95667
Tssr95668 10 108277722 to 108277734 12 + TSS region transcription start site region 95668
Tssr95669 10 108285227 to 108285238 11 + TSS region transcription start site region 95669
Tssr95670 10 108295038 to 108295049 11 + TSS region transcription start site region 95670
Tssr99204 10 108296564 to 108296578 14 - TSS region transcription start site region 99204
Gm40755 10 108322372 to 108332733 10361 - protein coding gene predicted gene, 40755
Cpgi2176 10 108331601 to 108333543 1942 CpG island CpG island 2176
Tssr95671 10 108332112 to 108332159 47 + TSS region transcription start site region 95671
Pawr 10 108332121 to 108414240 82119 + protein coding gene PRKC, apoptosis, WT1, regulator
Tssr95672 10 108332163 to 108332170 7 + TSS region transcription start site region 95672
Tssr95673 10 108332173 to 108332182 9 + TSS region transcription start site region 95673
Tssr95674 10 108332663 to 108332689 26 + TSS region transcription start site region 95674
Tssr95675 10 108332694 to 108332743 49 + TSS region transcription start site region 95675
Tssr95676 10 108333256 to 108333292 36 + TSS region transcription start site region 95676
Gm23105 10 108363665 to 108363798 133 + snoRNA gene predicted gene, 23105
Tssr95677 10 108414485 to 108414491 6 + TSS region transcription start site region 95677
Gm25591 10 108428067 to 108428160 93 + miRNA gene predicted gene, 25591
Tssr95678 10 108434176 to 108434194 18 + TSS region transcription start site region 95678
Gm36283 10 108436388 to 108453296 16908 + lincRNA gene predicted gene, 36283
Tssr95679 10 108436692 to 108436695 3 + TSS region transcription start site region 95679
Tssr99205 10 108443048 to 108443051 3 - TSS region transcription start site region 99205
Gm36440 10 108444318 to 108444806 488 - lncRNA gene predicted gene, 36440
Tssr99206 10 108445019 to 108445027 8 - TSS region transcription start site region 99206
Gm36601 10 108455756 to 108512067 56311 + lncRNA gene predicted gene, 36601
Gm47466 10 108482650 to 108482991 341 + pseudogene predicted gene, 47466
Syt1 10 108497650 to 109010978 513328 - protein coding gene synaptotagmin I
Tssr99207 10 108498302 to 108498311 9 - TSS region transcription start site region 99207
Tssr99208 10 108500453 to 108500465 12 - TSS region transcription start site region 99208
Tssr99209 10 108500528 to 108500539 11 - TSS region transcription start site region 99209
Cpgi2177 10 108528897 to 108529364 467 CpG island CpG island 2177
Tssr95680 10 108543104 to 108543110 6 + TSS region transcription start site region 95680
A830054O04Rik 10 108545755 to 108547936 2181 unclassified non-coding RNA gene RIKEN cDNA A830054O04 gene
5330428N10Rik 10 108637000 to 108640078 3078 unclassified gene RIKEN cDNA 5330428N10 gene
Tssr99210 10 108642379 to 108642391 12 - TSS region transcription start site region 99210
C030018G05Rik 10 108685012 to 108685794 782 unclassified gene RIKEN cDNA C030018G05 gene
Tssr99211 10 108690212 to 108690216 4 - TSS region transcription start site region 99211
Tssr95681 10 108691021 to 108691032 11 + TSS region transcription start site region 95681
Tssr99212 10 108691139 to 108691149 10 - TSS region transcription start site region 99212
Gm5136 10 108699044 to 108700160 1116 - protein coding gene predicted gene 5136
Tssr99213 10 108699771 to 108699811 40 - TSS region transcription start site region 99213
Tssr99214 10 108700109 to 108700143 34 - TSS region transcription start site region 99214
Tssr99215 10 108710819 to 108710832 13 - TSS region transcription start site region 99215
C030044C18Rik 10 108711506 to 108712274 768 unclassified gene RIKEN cDNA C030044C18 gene
Tssr95682 10 108716563 to 108716569 6 + TSS region transcription start site region 95682
Tssr99216 10 108719477 to 108719513 36 - TSS region transcription start site region 99216
2900074G08Rik 10 108773997 to 108774545 548 unclassified gene RIKEN cDNA 2900074G08 gene
Gm47472 10 108778311 to 108782873 4562 + unclassified gene predicted gene, 47472
Tssr99217 10 108796901 to 108796904 3 - TSS region transcription start site region 99217
Tssr99218 10 108799859 to 108799864 5 - TSS region transcription start site region 99218
Tssr99219 10 108879746 to 108879751 5 - TSS region transcription start site region 99219
Tssr99220 10 108879772 to 108879783 11 - TSS region transcription start site region 99220
Tssr99221 10 108894894 to 108894905 11 - TSS region transcription start site region 99221
Tssr99222 10 108902252 to 108902265 13 - TSS region transcription start site region 99222
A130086K04Rik 10 108917235 to 108921548 4313 unclassified gene RIKEN cDNA A130086K04 gene
6430709C05Rik 10 108932616 to 108934149 1533 unclassified gene RIKEN cDNA 6430709C05 gene
Gm47477 10 108953357 to 108956488 3131 - unclassified gene predicted gene, 47477
Tssr99223 10 109009055 to 109009105 50 - TSS region transcription start site region 99223
Cpgi2178 10 109010389 to 109010994 605 CpG island CpG island 2178
Tssr99224 10 109010608 to 109010619 11 - TSS region transcription start site region 99224
Tssr99225 10 109010621 to 109010685 64 - TSS region transcription start site region 99225
Tssr99226 10 109010690 to 109010723 33 - TSS region transcription start site region 99226
Tssr99227 10 109010735 to 109010746 11 - TSS region transcription start site region 99227
Tssr99228 10 109010860 to 109010918 58 - TSS region transcription start site region 99228
Tssr99229 10 109010922 to 109010952 30 - TSS region transcription start site region 99229
Tssr99230 10 109010955 to 109010983 28 - TSS region transcription start site region 99230
Cpgi2179 10 109011479 to 109011788 309 CpG island CpG island 2179
Gm22097 10 109089998 to 109090275 277 - unclassified non-coding RNA gene predicted gene, 22097
D10Mit99 10 109126566 to 109126704 138 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 99
Tssr95683 10 109137294 to 109137297 3 + TSS region transcription start site region 95683
Tssr3347 10 109309452 to 109309455 3 - TSS region transcription start site region 3347
Gm44495 10 109326769 to 109326851 82 - miRNA gene predicted gene, 44495
Gm23041 10 109368088 to 109368193 105 - snRNA gene predicted gene, 23041
Gm47329 10 109386267 to 109386487 220 - pseudogene predicted gene, 47329
D10Mit203 10 109415238 to 109415381 143 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 203
Gm40757 10 109597698 to 109642136 44438 + lncRNA gene predicted gene, 40757
Tssr99231 10 109638849 to 109638853 4 - TSS region transcription start site region 99231
Tssr3348 10 109642451 to 109642456 5 + TSS region transcription start site region 3348
3110043J17Rik 10 109648779 to 109649538 759 + unclassified gene RIKEN cDNA 3110043J17 gene
Nav3 10 109681573 to 110455897 774324 - protein coding gene neuron navigator 3
Cpgi2180 10 109684502 to 109684658 156 CpG island CpG island 2180