Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:106179293-107579305

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm48377 10 106183021 to 106183891 870 + unclassified gene predicted gene, 48377
Rps15a-ps1 10 106192378 to 106192770 392 - pseudogene ribosomal protein S15A, pseudogene 1
Tssr99181 10 106192799 to 106192801 2 - TSS region transcription start site region 99181
Gm48379 10 106358324 to 106358654 330 + pseudogene predicted gene, 48379
D10Mit292 10 106372705 to 106372829 124 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 292
Gm48380 10 106444397 to 106445102 705 + pseudogene predicted gene, 48380
C230021G24Rik 10 106466939 to 106470768 3829 - lincRNA gene RIKEN cDNA C230021G24 gene
Cpgi2169 10 106469384 to 106469832 448 CpG island CpG island 2169
Cpgi2170 10 106470004 to 106470528 524 CpG island CpG island 2170
Ppfia2 10 106470270 to 106933468 463198 + protein coding gene protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
Tssr95624 10 106470281 to 106470367 86 + TSS region transcription start site region 95624
Tssr95625 10 106496866 to 106496870 4 + TSS region transcription start site region 95625
Olfr1556-ps1 10 106502737 to 106503202 465 + pseudogene olfactory receptor 1556, pseudogene 1
4930532I03Rik 10 106555195 to 106602480 47285 - antisense lncRNA gene RIKEN cDNA 4930532I03 gene
Tssr95626 10 106615780 to 106615795 15 + TSS region transcription start site region 95626
Tssr95627 10 106632398 to 106632442 44 + TSS region transcription start site region 95627
Tssr95628 10 106632686 to 106632698 12 + TSS region transcription start site region 95628
Tssr95629 10 106632751 to 106632813 62 + TSS region transcription start site region 95629
Tssr95630 10 106638389 to 106638417 28 + TSS region transcription start site region 95630
Tssr95631 10 106675813 to 106675814 1 + TSS region transcription start site region 95631
Tssr3344 10 106723611 to 106723613 2 + TSS region transcription start site region 3344
Gm17848 10 106753812 to 106754906 1094 - pseudogene predicted gene, 17848
Tssr95632 10 106879005 to 106879012 7 + TSS region transcription start site region 95632
Tssr95633 10 106879293 to 106879305 12 + TSS region transcription start site region 95633
Tssr95634 10 106879340 to 106879353 13 + TSS region transcription start site region 95634
Tssr95635 10 106879388 to 106879395 7 + TSS region transcription start site region 95635
Tssr95636 10 106879417 to 106879429 12 + TSS region transcription start site region 95636
Tssr95637 10 106879815 to 106879832 17 + TSS region transcription start site region 95637
Tssr95638 10 106879871 to 106879901 30 + TSS region transcription start site region 95638
Tssr95639 10 106879957 to 106879968 11 + TSS region transcription start site region 95639
Tssr95640 10 106879994 to 106880006 12 + TSS region transcription start site region 95640
B230114P17Rik 10 106933516 to 106935951 2435 unclassified gene RIKEN cDNA B230114P17 gene
Acss3 10 106936164 to 107123664 187500 - protein coding gene acyl-CoA synthetase short-chain family member 3
Tssr95641 10 106949202 to 106949208 6 + TSS region transcription start site region 95641
Gm19007 10 106949297 to 106950170 873 + pseudogene predicted gene, 19007
E030002G19Rik 10 107039691 to 107043188 3497 unclassified gene RIKEN cDNA E030002G19 gene
Gm18040 10 107058523 to 107059349 826 - pseudogene predicted gene, 18040
Gm19181 10 107061044 to 107061983 939 - pseudogene predicted gene, 19181
Fcsa3 10 107091790 to 107091893 103 QTL femoral cross-sectional area 3
D10Mit162 10 107091790 to 107091893 103 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 162
Tssr99182 10 107123585 to 107123673 88 - TSS region transcription start site region 99182
Tssr99183 10 107123772 to 107123794 22 - TSS region transcription start site region 99183
Gm24745 10 107136974 to 107137058 84 + snoRNA gene predicted gene, 24745
Gm29674 10 107200132 to 107205699 5567 - lincRNA gene predicted gene, 29674
Tssr95642 10 107271328 to 107271364 36 + TSS region transcription start site region 95642
Cpgi2171 10 107271404 to 107272785 1381 CpG island CpG island 2171
Tssr95643 10 107271617 to 107271696 79 + TSS region transcription start site region 95643
Lin7a 10 107271686 to 107421474 149788 + protein coding gene lin-7 homolog A (C. elegans)
Tssr95644 10 107271697 to 107271720 23 + TSS region transcription start site region 95644
Tssr95645 10 107271827 to 107271850 23 + TSS region transcription start site region 95645
Tssr95646 10 107271868 to 107271888 20 + TSS region transcription start site region 95646
Tssr95647 10 107271890 to 107271901 11 + TSS region transcription start site region 95647
Tssr99184 10 107272705 to 107272736 31 - TSS region transcription start site region 99184
3110033O22Rik 10 107335769 to 107335946 177 unclassified gene RIKEN cDNA 3110033O22 gene
Tssr95648 10 107349906 to 107349918 12 + TSS region transcription start site region 95648
Tssr95649 10 107421232 to 107421238 6 + TSS region transcription start site region 95649
Gm38117 10 107436421 to 107437359 938 - unclassified gene predicted gene, 38117
Gm44403 10 107480406 to 107480534 128 + miRNA gene predicted gene, 44403
Myf5 10 107482908 to 107486134 3226 - protein coding gene myogenic factor 5
Tssr99185 10 107483792 to 107483796 4 - TSS region transcription start site region 99185
Ogrq4 10 107484128 to 92333194 -15150934 QTL overall growth rate QTL 4
Cpgi2172 10 107485562 to 107485823 261 CpG island CpG island 2172
Tssr99186 10 107486077 to 107486090 13 - TSS region transcription start site region 99186
Myf6 10 107492860 to 107494729 1869 - protein coding gene myogenic factor 6
Tssr99187 10 107494719 to 107494742 23 - TSS region transcription start site region 99187
Tssr99188 10 107494747 to 107494761 14 - TSS region transcription start site region 99188
Tssr99189 10 107494783 to 107494795 12 - TSS region transcription start site region 99189
Tssr95650 10 107495263 to 107495296 33 + TSS region transcription start site region 95650
Gm36177 10 107495268 to 107659403 164135 + lncRNA gene predicted gene, 36177
Ptprq 10 107517049 to 107720051 203002 - protein coding gene protein tyrosine phosphatase, receptor type, Q
Tssr99190 10 107547089 to 107547093 4 - TSS region transcription start site region 99190