Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:102687652-104047669

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51 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm47143 10 102683265 to 102694569 11304 + lincRNA gene predicted gene, 47143
Gm5175 10 102819320 to 102838659 19339 + pseudogene predicted gene 5175
Tssr99148 10 102836359 to 102836377 18 - TSS region transcription start site region 99148
Alx1 10 103007847 to 103029457 21610 - protein coding gene ALX homeobox 1
Cpgi2161 10 103028133 to 103028797 664 CpG island CpG island 2161
Tssr99149 10 103028603 to 103028657 54 - TSS region transcription start site region 99149
Tssr99150 10 103028771 to 103028782 11 - TSS region transcription start site region 99150
Tssr95599 10 103028943 to 103028979 36 + TSS region transcription start site region 95599
Gm34298 10 103028985 to 103032531 3546 + protein coding gene predicted gene, 34298
Tssr99151 10 103029043 to 103029053 10 - TSS region transcription start site region 99151
Tssr99152 10 103029060 to 103029080 20 - TSS region transcription start site region 99152
Cpgi2162 10 103029072 to 103029504 432 CpG island CpG island 2162
Tssr95600 10 103029132 to 103029143 11 + TSS region transcription start site region 95600
Tssr95601 10 103029166 to 103029176 10 + TSS region transcription start site region 95601
Gm17028 10 103029479 to 103030344 865 - lincRNA gene predicted gene 17028
Cpgi2163 10 103029852 to 103030359 507 CpG island CpG island 2163
Lrriq1 10 103046031 to 103236322 190291 - protein coding gene leucine-rich repeats and IQ motif containing 1
Tssr99153 10 103046302 to 103046305 3 - TSS region transcription start site region 99153
Gm25376 10 103121236 to 103121368 132 + snoRNA gene predicted gene, 25376
Tssr99154 10 103144921 to 103144930 9 - TSS region transcription start site region 99154
Tssr99155 10 103144968 to 103144979 11 - TSS region transcription start site region 99155
Tssr99156 10 103145477 to 103145492 15 - TSS region transcription start site region 99156
Gm47164 10 103207748 to 103213437 5689 - unclassified gene predicted gene, 47164
Cpgi2164 10 103236111 to 103236433 322 CpG island CpG island 2164
Tssr99157 10 103236280 to 103236327 47 - TSS region transcription start site region 99157
Tssr99158 10 103236345 to 103236354 9 - TSS region transcription start site region 99158
Tssr95602 10 103334553 to 103334586 33 + TSS region transcription start site region 95602
Tssr95603 10 103347095 to 103347106 11 + TSS region transcription start site region 95603
6430590A10Rik 10 103367189 to 103369365 2176 - lncRNA gene RIKEN cDNA 6430590A10 gene
Cpgi2165 10 103367448 to 103368965 1517 CpG island CpG island 2165
Tssr95604 10 103367652 to 103367669 17 + TSS region transcription start site region 95604
Tssr95605 10 103367692 to 103367747 55 + TSS region transcription start site region 95605
Tssr95606 10 103367748 to 103367836 88 + TSS region transcription start site region 95606
Slc6a15 10 103367783 to 103419377 51594 + protein coding gene solute carrier family 6 (neurotransmitter transporter), member 15
Tssr99159 10 103369062 to 103369069 7 - TSS region transcription start site region 99159
Tssr95607 10 103369327 to 103369346 19 + TSS region transcription start site region 95607
Tssr95608 10 103369376 to 103369381 5 + TSS region transcription start site region 95608
Gm8768 10 103429910 to 103430735 825 + pseudogene predicted gene 8768
Gm47223 10 103507362 to 103566565 59203 + lincRNA gene predicted gene, 47223
Gm47221 10 103512928 to 103571685 58757 + lincRNA gene predicted gene, 47221
Gm47220 10 103567646 to 103568051 405 + pseudogene predicted gene, 47220
Gm47222 10 103569209 to 103569401 192 - pseudogene predicted gene, 47222
Gm26923 10 103581398 to 103582393 995 - pseudogene predicted gene, 26923
Gm47224 10 103856267 to 103858332 2065 - lincRNA gene predicted gene, 47224
D10Mit293 10 103876129 to 103876278 149 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 293
D10Mit122 10 103877747 to 103877895 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 122
Sluc22 10 103877747 to 103877895 148 QTL susceptibility to lung cancer 22
Ednrbm1 10 103877895 to 92291521 -11586374 QTL endothelin receptor type B modifier 1
Gm47225 10 103893538 to 103893806 268 + pseudogene predicted gene, 47225
Gm25143 10 103959543 to 103959651 108 + snRNA gene predicted gene, 25143
Gm47226 10 103986993 to 103987906 913 + lincRNA gene predicted gene, 47226