Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:102237024-106119491

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164 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mgat4c 10 101681487 to 102391469 709982 + protein coding gene MGAT4 family, member C
Gm47031 10 102319613 to 102321894 2281 + sense intronic lncRNA gene predicted gene, 47031
Tssr95587 10 102374429 to 102374445 16 + TSS region transcription start site region 95587
Tssr3341 10 102388993 to 102388998 5 + TSS region transcription start site region 3341
Gm47033 10 102415883 to 102418014 2131 + lincRNA gene predicted gene, 47033
Gm47025 10 102431908 to 102432338 430 - unclassified gene predicted gene, 47025
Gm47101 10 102435269 to 102435543 274 + lincRNA gene predicted gene, 47101
Gm26988 10 102460198 to 102461142 944 + pseudogene predicted gene, 26988
Nts 10 102481756 to 102490418 8662 - protein coding gene neurotensin
Tssr99146 10 102490425 to 102490440 15 - TSS region transcription start site region 99146
Tssr95588 10 102511773 to 102511778 5 + TSS region transcription start site region 95588
Tssr95589 10 102512032 to 102512063 31 + TSS region transcription start site region 95589
Tssr95590 10 102512083 to 102512105 22 + TSS region transcription start site region 95590
Tssr95591 10 102512216 to 102512292 76 + TSS region transcription start site region 95591
Rassf9 10 102512222 to 102549736 37514 + protein coding gene Ras association (RalGDS/AF-6) domain family (N-terminal) member 9
Tssr95592 10 102512325 to 102512338 13 + TSS region transcription start site region 95592
Tssr95593 10 102512394 to 102512409 15 + TSS region transcription start site region 95593
Tssr99147 10 102512396 to 102512417 21 - TSS region transcription start site region 99147
Tssr95594 10 102512446 to 102512458 12 + TSS region transcription start site region 95594
Tssr95595 10 102512483 to 102512521 38 + TSS region transcription start site region 95595
Tssr95596 10 102519577 to 102519582 5 + TSS region transcription start site region 95596
Tssr95597 10 102540261 to 102540281 20 + TSS region transcription start site region 95597
Tssr95598 10 102546713 to 102546718 5 + TSS region transcription start site region 95598
Gm47142 10 102683069 to 102683315 246 - pseudogene predicted gene, 47142
Gm47143 10 102683265 to 102694569 11304 + lincRNA gene predicted gene, 47143
Gm5175 10 102819320 to 102838659 19339 + pseudogene predicted gene 5175
Tssr99148 10 102836359 to 102836377 18 - TSS region transcription start site region 99148
Alx1 10 103007847 to 103029457 21610 - protein coding gene ALX homeobox 1
Cpgi2161 10 103028133 to 103028797 664 CpG island CpG island 2161
Tssr99149 10 103028603 to 103028657 54 - TSS region transcription start site region 99149
Tssr99150 10 103028771 to 103028782 11 - TSS region transcription start site region 99150
Tssr95599 10 103028943 to 103028979 36 + TSS region transcription start site region 95599
Gm34298 10 103028985 to 103032531 3546 + protein coding gene predicted gene, 34298
Tssr99151 10 103029043 to 103029053 10 - TSS region transcription start site region 99151
Tssr99152 10 103029060 to 103029080 20 - TSS region transcription start site region 99152
Cpgi2162 10 103029072 to 103029504 432 CpG island CpG island 2162
Tssr95600 10 103029132 to 103029143 11 + TSS region transcription start site region 95600
Tssr95601 10 103029166 to 103029176 10 + TSS region transcription start site region 95601
Gm17028 10 103029479 to 103030344 865 - lincRNA gene predicted gene 17028
Cpgi2163 10 103029852 to 103030359 507 CpG island CpG island 2163
Lrriq1 10 103046031 to 103236322 190291 - protein coding gene leucine-rich repeats and IQ motif containing 1
Tssr99153 10 103046302 to 103046305 3 - TSS region transcription start site region 99153
Gm25376 10 103121236 to 103121368 132 + snoRNA gene predicted gene, 25376
Tssr99154 10 103144921 to 103144930 9 - TSS region transcription start site region 99154
Tssr99155 10 103144968 to 103144979 11 - TSS region transcription start site region 99155
Tssr99156 10 103145477 to 103145492 15 - TSS region transcription start site region 99156
Gm47164 10 103207748 to 103213437 5689 - unclassified gene predicted gene, 47164
Cpgi2164 10 103236111 to 103236433 322 CpG island CpG island 2164
Tssr99157 10 103236280 to 103236327 47 - TSS region transcription start site region 99157
Tssr99158 10 103236345 to 103236354 9 - TSS region transcription start site region 99158
Tssr95602 10 103334553 to 103334586 33 + TSS region transcription start site region 95602
Tssr95603 10 103347095 to 103347106 11 + TSS region transcription start site region 95603
6430590A10Rik 10 103367189 to 103369365 2176 - lncRNA gene RIKEN cDNA 6430590A10 gene
Cpgi2165 10 103367448 to 103368965 1517 CpG island CpG island 2165
Tssr95604 10 103367652 to 103367669 17 + TSS region transcription start site region 95604
Tssr95605 10 103367692 to 103367747 55 + TSS region transcription start site region 95605
Tssr95606 10 103367748 to 103367836 88 + TSS region transcription start site region 95606
Slc6a15 10 103367783 to 103419377 51594 + protein coding gene solute carrier family 6 (neurotransmitter transporter), member 15
Tssr99159 10 103369062 to 103369069 7 - TSS region transcription start site region 99159
Tssr95607 10 103369327 to 103369346 19 + TSS region transcription start site region 95607
Tssr95608 10 103369376 to 103369381 5 + TSS region transcription start site region 95608
Gm8768 10 103429910 to 103430735 825 + pseudogene predicted gene 8768
Gm47223 10 103507362 to 103566565 59203 + lincRNA gene predicted gene, 47223
Gm47221 10 103512928 to 103571685 58757 + lincRNA gene predicted gene, 47221
Gm47220 10 103567646 to 103568051 405 + pseudogene predicted gene, 47220
Gm47222 10 103569209 to 103569401 192 - pseudogene predicted gene, 47222
Gm26923 10 103581398 to 103582393 995 - pseudogene predicted gene, 26923
Gm47224 10 103856267 to 103858332 2065 - lincRNA gene predicted gene, 47224
D10Mit293 10 103876129 to 103876278 149 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 293
D10Mit122 10 103877747 to 103877895 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 122
Sluc22 10 103877747 to 103877895 148 QTL susceptibility to lung cancer 22
Ednrbm1 10 103877895 to 92291521 -11586374 QTL endothelin receptor type B modifier 1
Gm47225 10 103893538 to 103893806 268 + pseudogene predicted gene, 47225
Gm25143 10 103959543 to 103959651 108 + snRNA gene predicted gene, 25143
Gm47226 10 103986993 to 103987906 913 + lincRNA gene predicted gene, 47226
Insq4 10 104073224 to 104073368 144 QTL insulin QTL 4
Uvbi1 10 104073224 to 104073368 144 QTL UVB induced immunosuppression 1
D10Mit70 10 104073224 to 104073368 144 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 70
Gm47227 10 104082225 to 104082341 116 + pseudogene predicted gene, 47227
Gm47228 10 104096323 to 104096761 438 - pseudogene predicted gene, 47228
Tssr99160 10 104127359 to 104127361 2 - TSS region transcription start site region 99160
Gm21293 10 104142987 to 104145427 2440 + protein coding gene predicted gene, 21293
Gm6763 10 104151497 to 104153936 2439 + protein coding gene predicted gene 6763
Gm8764 10 104160006 to 104162444 2438 + protein coding gene predicted gene 8764
Gm21304 10 104168515 to 104170954 2439 + protein coding gene predicted gene, 21304
Gm21312 10 104177024 to 104179491 2467 + protein coding gene predicted gene, 21312
Gm20765 10 104185533 to 104188000 2467 + protein coding gene predicted gene, 20765
Gm4340 10 104194042 to 104196522 2480 + protein coding gene predicted gene 4340
Gm22339 10 104224838 to 104224899 61 - snRNA gene predicted gene, 22339
Tssr95609 10 104267539 to 104267546 7 + TSS region transcription start site region 95609
Mir6411 10 104287269 to 104287376 107 + miRNA gene microRNA 6411
Tssr95610 10 104422568 to 104422570 2 + TSS region transcription start site region 95610
Gm22945 10 104471051 to 104471207 156 - snRNA gene predicted gene, 22945
D10Mit134 10 104611721 to 104611820 99 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 134
Tssr95611 10 104659647 to 104659650 3 + TSS region transcription start site region 95611
Tssr95612 10 104746952 to 104746956 4 + TSS region transcription start site region 95612
Gm25522 10 104865204 to 104865308 104 - snRNA gene predicted gene, 25522
Gm48184 10 104874212 to 104874484 272 - pseudogene predicted gene, 48184
Gm40751 10 104926487 to 104936593 10106 - lncRNA gene predicted gene, 40751
Tssr3342 10 104941103 to 104941110 7 + TSS region transcription start site region 3342
Tssr95613 10 105040263 to 105040292 29 + TSS region transcription start site region 95613
Gm25587 10 105040273 to 105040438 165 + snRNA gene predicted gene, 25587
Gm40752 10 105040286 to 105043809 3523 - lncRNA gene predicted gene, 40752
Gm40753 10 105102823 to 105105804 2981 - lncRNA gene predicted gene, 40753
Gm25422 10 105140207 to 105140335 128 - snoRNA gene predicted gene, 25422
Gm36997 10 105142236 to 105142942 706 - unclassified gene predicted gene, 36997
Tmtc2 10 105187663 to 105574451 386788 - protein coding gene transmembrane and tetratricopeptide repeat containing 2
Tssr99161 10 105195986 to 105195990 4 - TSS region transcription start site region 99161
Tssr95614 10 105238123 to 105238157 34 + TSS region transcription start site region 95614
Tssr95615 10 105238488 to 105238516 28 + TSS region transcription start site region 95615
Ipng2 10 105252393 to 118661448 13409055 QTL imprinted postnatal growth 2
D10Mit133 10 105252393 to 105252530 137 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 133
Skl4 10 105252393 to 105252530 137 QTL skeletal size (tail length) 4
Tssr99162 10 105296545 to 105296549 4 - TSS region transcription start site region 99162
Tssr99163 10 105314043 to 105314047 4 - TSS region transcription start site region 99163
Tssr99164 10 105315686 to 105315693 7 - TSS region transcription start site region 99164
Tssr99165 10 105315702 to 105315709 7 - TSS region transcription start site region 99165
Gm48206 10 105340249 to 105342314 2065 + unclassified gene predicted gene, 48206
Gm48205 10 105377340 to 105377476 136 - unclassified gene predicted gene, 48205
Gm48203 10 105392502 to 105394286 1784 - unclassified gene predicted gene, 48203
Gm46241 10 105440855 to 105452530 11675 - lncRNA gene predicted gene, 46241
Tssr99166 10 105456226 to 105456235 9 - TSS region transcription start site region 99166
Tssr99167 10 105459449 to 105459484 35 - TSS region transcription start site region 99167
Tssr99168 10 105474138 to 105474143 5 - TSS region transcription start site region 99168
Gm15666 10 105506113 to 105507034 921 - pseudogene predicted gene 15666
Gm48204 10 105514681 to 105516649 1968 - unclassified gene predicted gene, 48204
Gm15664 10 105520460 to 105520643 183 + pseudogene predicted gene 15664
Tssr99169 10 105521766 to 105521795 29 - TSS region transcription start site region 99169
Tssr99170 10 105522004 to 105522017 13 - TSS region transcription start site region 99170
4930588G05Rik 10 105524039 to 105526359 2320 unclassified gene RIKEN cDNA 4930588G05 gene
Tssr99171 10 105532577 to 105532581 4 - TSS region transcription start site region 99171
Gm48207 10 105532984 to 105534493 1509 - unclassified gene predicted gene, 48207
D10Mit135 10 105542935 to 105543081 146 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 135
Tssr99172 10 105558945 to 105558963 18 - TSS region transcription start site region 99172
Tssr99173 10 105568252 to 105568256 4 - TSS region transcription start site region 99173
Tssr95616 10 105573156 to 105573167 11 + TSS region transcription start site region 95616
Tssr95617 10 105573274 to 105573277 3 + TSS region transcription start site region 95617
Cpgi2166 10 105573391 to 105575336 1945 CpG island CpG island 2166
Tssr99174 10 105574168 to 105574243 75 - TSS region transcription start site region 99174
Tssr3343 10 105574381 to 105574382 1 - TSS region transcription start site region 3343
Tssr99175 10 105574389 to 105574407 18 - TSS region transcription start site region 99175
Tssr99176 10 105574421 to 105574433 12 - TSS region transcription start site region 99176
Tssr99177 10 105574436 to 105574451 15 - TSS region transcription start site region 99177
Tssr99178 10 105574466 to 105574469 3 - TSS region transcription start site region 99178
Tssr95618 10 105574538 to 105574566 28 + TSS region transcription start site region 95618
Gm15663 10 105574551 to 105583870 9319 + lncRNA gene predicted gene 15663
Mettl25 10 105763189 to 105841380 78191 - protein coding gene methyltransferase like 25
Cpgi2167 10 105799630 to 105799795 165 CpG island CpG island 2167
n-R5s80 10 105804087 to 105804197 110 - rRNA gene nuclear encoded rRNA 5S 80
Gm48298 10 105806538 to 105808867 2329 - unclassified gene predicted gene, 48298
Cpgi2168 10 105840871 to 105841920 1049 CpG island CpG island 2168
Tssr95619 10 105841064 to 105841132 68 + TSS region transcription start site region 95619
Tssr99179 10 105841323 to 105841372 49 - TSS region transcription start site region 99179
Tssr95620 10 105841421 to 105841436 15 + TSS region transcription start site region 95620
Tssr95621 10 105841454 to 105841512 58 + TSS region transcription start site region 95621
Ccdc59 10 105841479 to 105847510 6031 + protein coding gene coiled-coil domain containing 59
Tssr95622 10 105842802 to 105842816 14 + TSS region transcription start site region 95622
Gm24237 10 105929612 to 105929743 131 - snoRNA gene predicted gene, 24237
Tgq20 10 106000595 to 106000595 0 QTL triglyceride QTL 20
Tssr99180 10 106007464 to 106007473 9 - TSS region transcription start site region 99180
D10Nds2 10 106017432 to 106017575 143 DNA segment DNA segment, Chr 10, Nuffield Department of Surgery 2
Gm25342 10 106055958 to 106056079 121 - snoRNA gene predicted gene, 25342
Gm8796 10 106065857 to 106066789 932 + pseudogene predicted gene 8796
Gm48363 10 106074227 to 106079076 4849 + unclassified gene predicted gene, 48363