Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:102086031-104196322

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mgat4c 10 101681487 to 102391469 709982 + protein coding gene MGAT4 family, member C
Tssr95579 10 102158872 to 102158889 17 + TSS region transcription start site region 95579
Tssr95580 10 102158894 to 102158916 22 + TSS region transcription start site region 95580
Tssr95581 10 102158980 to 102158997 17 + TSS region transcription start site region 95581
Tssr95582 10 102159000 to 102159018 18 + TSS region transcription start site region 95582
Tssr95583 10 102167638 to 102167642 4 + TSS region transcription start site region 95583
Tssr95584 10 102178427 to 102178429 2 + TSS region transcription start site region 95584
Tssr95585 10 102201832 to 102201836 4 + TSS region transcription start site region 95585
Tssr95586 10 102225701 to 102225705 4 + TSS region transcription start site region 95586
Gm47031 10 102319613 to 102321894 2281 + sense intronic lncRNA gene predicted gene, 47031
Tssr95587 10 102374429 to 102374445 16 + TSS region transcription start site region 95587
Tssr3341 10 102388993 to 102388998 5 + TSS region transcription start site region 3341
Gm47033 10 102415883 to 102418014 2131 + lincRNA gene predicted gene, 47033
Gm47025 10 102431908 to 102432338 430 - unclassified gene predicted gene, 47025
Gm47101 10 102435269 to 102435543 274 + lincRNA gene predicted gene, 47101
Gm26988 10 102460198 to 102461142 944 + pseudogene predicted gene, 26988
Nts 10 102481756 to 102490418 8662 - protein coding gene neurotensin
Tssr99146 10 102490425 to 102490440 15 - TSS region transcription start site region 99146
Tssr95588 10 102511773 to 102511778 5 + TSS region transcription start site region 95588
Tssr95589 10 102512032 to 102512063 31 + TSS region transcription start site region 95589
Tssr95590 10 102512083 to 102512105 22 + TSS region transcription start site region 95590
Tssr95591 10 102512216 to 102512292 76 + TSS region transcription start site region 95591
Rassf9 10 102512222 to 102549736 37514 + protein coding gene Ras association (RalGDS/AF-6) domain family (N-terminal) member 9
Tssr95592 10 102512325 to 102512338 13 + TSS region transcription start site region 95592
Tssr95593 10 102512394 to 102512409 15 + TSS region transcription start site region 95593
Tssr99147 10 102512396 to 102512417 21 - TSS region transcription start site region 99147
Tssr95594 10 102512446 to 102512458 12 + TSS region transcription start site region 95594
Tssr95595 10 102512483 to 102512521 38 + TSS region transcription start site region 95595
Tssr95596 10 102519577 to 102519582 5 + TSS region transcription start site region 95596
Tssr95597 10 102540261 to 102540281 20 + TSS region transcription start site region 95597
Tssr95598 10 102546713 to 102546718 5 + TSS region transcription start site region 95598
Gm47142 10 102683069 to 102683315 246 - pseudogene predicted gene, 47142
Gm47143 10 102683265 to 102694569 11304 + lincRNA gene predicted gene, 47143
Gm5175 10 102819320 to 102838659 19339 + pseudogene predicted gene 5175
Tssr99148 10 102836359 to 102836377 18 - TSS region transcription start site region 99148
Alx1 10 103007847 to 103029457 21610 - protein coding gene ALX homeobox 1
Cpgi2161 10 103028133 to 103028797 664 CpG island CpG island 2161
Tssr99149 10 103028603 to 103028657 54 - TSS region transcription start site region 99149
Tssr99150 10 103028771 to 103028782 11 - TSS region transcription start site region 99150
Tssr95599 10 103028943 to 103028979 36 + TSS region transcription start site region 95599
Gm34298 10 103028985 to 103032531 3546 + protein coding gene predicted gene, 34298
Tssr99151 10 103029043 to 103029053 10 - TSS region transcription start site region 99151
Tssr99152 10 103029060 to 103029080 20 - TSS region transcription start site region 99152
Cpgi2162 10 103029072 to 103029504 432 CpG island CpG island 2162
Tssr95600 10 103029132 to 103029143 11 + TSS region transcription start site region 95600
Tssr95601 10 103029166 to 103029176 10 + TSS region transcription start site region 95601
Gm17028 10 103029479 to 103030344 865 - lincRNA gene predicted gene 17028
Cpgi2163 10 103029852 to 103030359 507 CpG island CpG island 2163
Lrriq1 10 103046031 to 103236322 190291 - protein coding gene leucine-rich repeats and IQ motif containing 1
Tssr99153 10 103046302 to 103046305 3 - TSS region transcription start site region 99153
Gm25376 10 103121236 to 103121368 132 + snoRNA gene predicted gene, 25376
Tssr99154 10 103144921 to 103144930 9 - TSS region transcription start site region 99154
Tssr99155 10 103144968 to 103144979 11 - TSS region transcription start site region 99155
Tssr99156 10 103145477 to 103145492 15 - TSS region transcription start site region 99156
Gm47164 10 103207748 to 103213437 5689 - unclassified gene predicted gene, 47164
Cpgi2164 10 103236111 to 103236433 322 CpG island CpG island 2164
Tssr99157 10 103236280 to 103236327 47 - TSS region transcription start site region 99157
Tssr99158 10 103236345 to 103236354 9 - TSS region transcription start site region 99158
Tssr95602 10 103334553 to 103334586 33 + TSS region transcription start site region 95602
Tssr95603 10 103347095 to 103347106 11 + TSS region transcription start site region 95603
6430590A10Rik 10 103367189 to 103369365 2176 - lncRNA gene RIKEN cDNA 6430590A10 gene
Cpgi2165 10 103367448 to 103368965 1517 CpG island CpG island 2165
Tssr95604 10 103367652 to 103367669 17 + TSS region transcription start site region 95604
Tssr95605 10 103367692 to 103367747 55 + TSS region transcription start site region 95605
Tssr95606 10 103367748 to 103367836 88 + TSS region transcription start site region 95606
Slc6a15 10 103367783 to 103419377 51594 + protein coding gene solute carrier family 6 (neurotransmitter transporter), member 15
Tssr99159 10 103369062 to 103369069 7 - TSS region transcription start site region 99159
Tssr95607 10 103369327 to 103369346 19 + TSS region transcription start site region 95607
Tssr95608 10 103369376 to 103369381 5 + TSS region transcription start site region 95608
Gm8768 10 103429910 to 103430735 825 + pseudogene predicted gene 8768
Gm47223 10 103507362 to 103566565 59203 + lincRNA gene predicted gene, 47223
Gm47221 10 103512928 to 103571685 58757 + lincRNA gene predicted gene, 47221
Gm47220 10 103567646 to 103568051 405 + pseudogene predicted gene, 47220
Gm47222 10 103569209 to 103569401 192 - pseudogene predicted gene, 47222
Gm26923 10 103581398 to 103582393 995 - pseudogene predicted gene, 26923
Gm47224 10 103856267 to 103858332 2065 - lincRNA gene predicted gene, 47224
D10Mit293 10 103876129 to 103876278 149 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 293
D10Mit122 10 103877747 to 103877895 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 122
Sluc22 10 103877747 to 103877895 148 QTL susceptibility to lung cancer 22
Ednrbm1 10 103877895 to 92291521 -11586374 QTL endothelin receptor type B modifier 1
Gm47225 10 103893538 to 103893806 268 + pseudogene predicted gene, 47225
Gm25143 10 103959543 to 103959651 108 + snRNA gene predicted gene, 25143
Gm47226 10 103986993 to 103987906 913 + lincRNA gene predicted gene, 47226
Uvbi1 10 104073224 to 104073368 144 QTL UVB induced immunosuppression 1
Insq4 10 104073224 to 104073368 144 QTL insulin QTL 4
D10Mit70 10 104073224 to 104073368 144 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 70
Gm47227 10 104082225 to 104082341 116 + pseudogene predicted gene, 47227
Gm47228 10 104096323 to 104096761 438 - pseudogene predicted gene, 47228
Tssr99160 10 104127359 to 104127361 2 - TSS region transcription start site region 99160
Gm21293 10 104142987 to 104145427 2440 + protein coding gene predicted gene, 21293
Gm6763 10 104151497 to 104153936 2439 + protein coding gene predicted gene 6763
Gm8764 10 104160006 to 104162444 2438 + protein coding gene predicted gene 8764
Gm21304 10 104168515 to 104170954 2439 + protein coding gene predicted gene, 21304
Gm21312 10 104177024 to 104179491 2467 + protein coding gene predicted gene, 21312
Gm20765 10 104185533 to 104188000 2467 + protein coding gene predicted gene, 20765
Gm4340 10 104194042 to 104196522 2480 + protein coding gene predicted gene 4340