Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:100261695-103101720

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm8689 10 100297999 to 100298643 644 - pseudogene predicted gene 8689
Gm9476 10 100306535 to 100307185 650 - pseudogene predicted gene 9476
Gm47632 10 100317024 to 100320270 3246 - pseudogene predicted gene, 47632
Gm47628 10 100320313 to 100321425 1112 - pseudogene predicted gene, 47628
Gm47630 10 100321102 to 100321371 269 + pseudogene predicted gene, 47630
Gm4898 10 100325455 to 100326086 631 + pseudogene predicted gene 4898
Gm8701 10 100330549 to 100331191 642 + pseudogene predicted gene 8701
Gm4301 10 100335676 to 100336589 913 + protein coding gene predicted gene 4301
Gm4302 10 100340836 to 100341762 926 + protein coding gene predicted gene 4302
Gm4303 10 100345972 to 100346881 909 + protein coding gene predicted gene 4303
Gm4305 10 100351093 to 100352002 909 + protein coding gene predicted gene 4305
Gm8711 10 100356246 to 100356888 642 + pseudogene predicted gene 8711
Gm4307 10 100361338 to 100362247 909 + protein coding gene predicted gene 4307
Gm4308 10 100366529 to 100367173 644 + pseudogene predicted gene 4308
Gm4310 10 100371480 to 100372124 644 - pseudogene predicted gene 4310
Gm47631 10 100372863 to 100383831 10968 - unclassified non-coding RNA gene predicted gene, 47631
Gm8723 10 100376684 to 100377326 642 - pseudogene predicted gene 8723
Gm4312 10 100381647 to 100382560 913 - protein coding gene predicted gene 4312
Gm4781 10 100396413 to 100397063 650 - pseudogene predicted gene 4781
Gm47673 10 100432938 to 100433569 631 - unclassified gene predicted gene, 47673
Tmtc3 10 100443902 to 100487347 43445 - protein coding gene transmembrane and tetratricopeptide repeat containing 3
Tssr99138 10 100444983 to 100444997 14 - TSS region transcription start site region 99138
Tssr99139 10 100445036 to 100445040 4 - TSS region transcription start site region 99139
Tssr95566 10 100485402 to 100485450 48 + TSS region transcription start site region 95566
Cpgi2158 10 100487025 to 100487925 900 CpG island CpG island 2158
Tssr99140 10 100487271 to 100487288 17 - TSS region transcription start site region 99140
Tssr99141 10 100487291 to 100487311 20 - TSS region transcription start site region 99141
Tssr99142 10 100487316 to 100487357 41 - TSS region transcription start site region 99142
Cep290 10 100487548 to 100573665 86117 + protein coding gene centrosomal protein 290
Tssr95567 10 100487573 to 100487633 60 + TSS region transcription start site region 95567
Tssr95568 10 100544391 to 100544433 42 + TSS region transcription start site region 95568
4930430F08Rik 10 100572274 to 100589387 17113 - protein coding gene RIKEN cDNA 4930430F08 gene
Gm47956 10 100577426 to 100583711 6285 + unclassified non-coding RNA gene predicted gene, 47956
Cpgi2159 10 100588844 to 100589384 540 CpG island CpG island 2159
Tssr95569 10 100589110 to 100589131 21 + TSS region transcription start site region 95569
Tssr99143 10 100589205 to 100589269 64 - TSS region transcription start site region 99143
Tssr99144 10 100590413 to 100590426 13 - TSS region transcription start site region 99144
Tssr99145 10 100590427 to 100590432 5 - TSS region transcription start site region 99145
Tssr3339 10 100590437 to 100590445 8 - TSS region transcription start site region 3339
1700017N19Rik 10 100590511 to 100618391 27880 + protein coding gene RIKEN cDNA 1700017N19 gene
Tssr95570 10 100590522 to 100590533 11 + TSS region transcription start site region 95570
Tssr95571 10 100592365 to 100592382 17 + TSS region transcription start site region 95571
Tssr95572 10 100592386 to 100592406 20 + TSS region transcription start site region 95572
Cpgi2160 10 100612820 to 100613001 181 CpG island CpG island 2160
Gm47325 10 100651630 to 100651942 312 + pseudogene predicted gene, 47325
Gm35722 10 100708375 to 100741635 33260 - lincRNA gene predicted gene, 35722
Tssr95573 10 100820894 to 100820895 1 + TSS region transcription start site region 95573
Gm19233 10 101271621 to 101272556 935 + pseudogene predicted gene, 19233
Gm26278 10 101544177 to 101544308 131 + snoRNA gene predicted gene, 26278
Mgat4c 10 101681487 to 102391469 709982 + protein coding gene MGAT4 family, member C
Tssr95574 10 101681622 to 101681662 40 + TSS region transcription start site region 95574
Tssr95575 10 101681675 to 101681686 11 + TSS region transcription start site region 95575
Tssr95576 10 101681695 to 101681720 25 + TSS region transcription start site region 95576
Tssr95577 10 101681858 to 101681873 15 + TSS region transcription start site region 95577
Gm47032 10 101730775 to 101731561 786 + unclassified gene predicted gene, 47032
Mir3059 10 101772692 to 101772772 80 + miRNA gene microRNA 3059
Tssr3340 10 101963742 to 101963743 1 - TSS region transcription start site region 3340
Tssr95578 10 102079680 to 102079683 3 + TSS region transcription start site region 95578
Tssr95579 10 102158872 to 102158889 17 + TSS region transcription start site region 95579
Tssr95580 10 102158894 to 102158916 22 + TSS region transcription start site region 95580
Tssr95581 10 102158980 to 102158997 17 + TSS region transcription start site region 95581
Tssr95582 10 102159000 to 102159018 18 + TSS region transcription start site region 95582
Tssr95583 10 102167638 to 102167642 4 + TSS region transcription start site region 95583
Tssr95584 10 102178427 to 102178429 2 + TSS region transcription start site region 95584
Tssr95585 10 102201832 to 102201836 4 + TSS region transcription start site region 95585
Tssr95586 10 102225701 to 102225705 4 + TSS region transcription start site region 95586
Gm47031 10 102319613 to 102321894 2281 + sense intronic lncRNA gene predicted gene, 47031
Tssr95587 10 102374429 to 102374445 16 + TSS region transcription start site region 95587
Tssr3341 10 102388993 to 102388998 5 + TSS region transcription start site region 3341
Gm47033 10 102415883 to 102418014 2131 + lincRNA gene predicted gene, 47033
Gm47025 10 102431908 to 102432338 430 - unclassified gene predicted gene, 47025
Gm47101 10 102435269 to 102435543 274 + lincRNA gene predicted gene, 47101
Gm26988 10 102460198 to 102461142 944 + pseudogene predicted gene, 26988
Nts 10 102481756 to 102490418 8662 - protein coding gene neurotensin
Tssr99146 10 102490425 to 102490440 15 - TSS region transcription start site region 99146
Tssr95588 10 102511773 to 102511778 5 + TSS region transcription start site region 95588
Tssr95589 10 102512032 to 102512063 31 + TSS region transcription start site region 95589
Tssr95590 10 102512083 to 102512105 22 + TSS region transcription start site region 95590
Tssr95591 10 102512216 to 102512292 76 + TSS region transcription start site region 95591
Rassf9 10 102512222 to 102549736 37514 + protein coding gene Ras association (RalGDS/AF-6) domain family (N-terminal) member 9
Tssr95592 10 102512325 to 102512338 13 + TSS region transcription start site region 95592
Tssr95593 10 102512394 to 102512409 15 + TSS region transcription start site region 95593
Tssr99147 10 102512396 to 102512417 21 - TSS region transcription start site region 99147
Tssr95594 10 102512446 to 102512458 12 + TSS region transcription start site region 95594
Tssr95595 10 102512483 to 102512521 38 + TSS region transcription start site region 95595
Tssr95596 10 102519577 to 102519582 5 + TSS region transcription start site region 95596
Tssr95597 10 102540261 to 102540281 20 + TSS region transcription start site region 95597
Tssr95598 10 102546713 to 102546718 5 + TSS region transcription start site region 95598
Gm47142 10 102683069 to 102683315 246 - pseudogene predicted gene, 47142
Gm47143 10 102683265 to 102694569 11304 + lincRNA gene predicted gene, 47143
Gm5175 10 102819320 to 102838659 19339 + pseudogene predicted gene 5175
Tssr99148 10 102836359 to 102836377 18 - TSS region transcription start site region 99148
Alx1 10 103007847 to 103029457 21610 - protein coding gene ALX homeobox 1
Cpgi2161 10 103028133 to 103028797 664 CpG island CpG island 2161
Tssr99149 10 103028603 to 103028657 54 - TSS region transcription start site region 99149
Tssr99150 10 103028771 to 103028782 11 - TSS region transcription start site region 99150
Tssr95599 10 103028943 to 103028979 36 + TSS region transcription start site region 95599
Gm34298 10 103028985 to 103032531 3546 + protein coding gene predicted gene, 34298
Tssr99151 10 103029043 to 103029053 10 - TSS region transcription start site region 99151
Tssr99152 10 103029060 to 103029080 20 - TSS region transcription start site region 99152
Cpgi2162 10 103029072 to 103029504 432 CpG island CpG island 2162
Tssr95600 10 103029132 to 103029143 11 + TSS region transcription start site region 95600
Tssr95601 10 103029166 to 103029176 10 + TSS region transcription start site region 95601
Gm17028 10 103029479 to 103030344 865 - lincRNA gene predicted gene 17028
Cpgi2163 10 103029852 to 103030359 507 CpG island CpG island 2163
Lrriq1 10 103046031 to 103236322 190291 - protein coding gene leucine-rich repeats and IQ motif containing 1
Tssr99153 10 103046302 to 103046305 3 - TSS region transcription start site region 99153