Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:100076695-103286720

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130 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kitl 10 100015635 to 100100416 84781 + protein coding gene kit ligand
Tssr95559 10 100096519 to 100096523 4 + TSS region transcription start site region 95559
Tssr95560 10 100097023 to 100097035 12 + TSS region transcription start site region 95560
Tssr95561 10 100098136 to 100098154 18 + TSS region transcription start site region 95561
Tssr95562 10 100098574 to 100098591 17 + TSS region transcription start site region 95562
Tssr95563 10 100099064 to 100099082 18 + TSS region transcription start site region 95563
Tssr95564 10 100099165 to 100099182 17 + TSS region transcription start site region 95564
Tssr95565 10 100099825 to 100099841 16 + TSS region transcription start site region 95565
Igf1sl2 10 100100416 to 87858265 -12242151 QTL IGF-1 serum levels 2
Gm35533 10 100129868 to 100144126 14258 - lincRNA gene predicted gene, 35533
Gm22918 10 100139501 to 100139610 109 + miRNA gene predicted gene, 22918
Gm25287 10 100144254 to 100144363 109 + miRNA gene predicted gene, 25287
mwfh 10 100181141 to 100181274 133 QTL modifier of white forlock hypopigmentation
D10Mit178 10 100181141 to 100181274 133 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 178
Gm47627 10 100203874 to 100204342 468 - unclassified gene predicted gene, 47627
Gm8689 10 100297999 to 100298643 644 - pseudogene predicted gene 8689
Gm9476 10 100306535 to 100307185 650 - pseudogene predicted gene 9476
Gm47632 10 100317024 to 100320270 3246 - pseudogene predicted gene, 47632
Gm47628 10 100320313 to 100321425 1112 - pseudogene predicted gene, 47628
Gm47630 10 100321102 to 100321371 269 + pseudogene predicted gene, 47630
Gm4898 10 100325455 to 100326086 631 + pseudogene predicted gene 4898
Gm8701 10 100330549 to 100331191 642 + pseudogene predicted gene 8701
Gm4301 10 100335676 to 100336589 913 + protein coding gene predicted gene 4301
Gm4302 10 100340836 to 100341762 926 + protein coding gene predicted gene 4302
Gm4303 10 100345972 to 100346881 909 + protein coding gene predicted gene 4303
Gm4305 10 100351093 to 100352002 909 + protein coding gene predicted gene 4305
Gm8711 10 100356246 to 100356888 642 + pseudogene predicted gene 8711
Gm4307 10 100361338 to 100362247 909 + protein coding gene predicted gene 4307
Gm4308 10 100366529 to 100367173 644 + pseudogene predicted gene 4308
Gm4310 10 100371480 to 100372124 644 - pseudogene predicted gene 4310
Gm47631 10 100372863 to 100383831 10968 - unclassified non-coding RNA gene predicted gene, 47631
Gm8723 10 100376684 to 100377326 642 - pseudogene predicted gene 8723
Gm4312 10 100381647 to 100382560 913 - protein coding gene predicted gene 4312
Gm4781 10 100396413 to 100397063 650 - pseudogene predicted gene 4781
Gm47673 10 100432938 to 100433569 631 - unclassified gene predicted gene, 47673
Tmtc3 10 100443902 to 100487347 43445 - protein coding gene transmembrane and tetratricopeptide repeat containing 3
Tssr99138 10 100444983 to 100444997 14 - TSS region transcription start site region 99138
Tssr99139 10 100445036 to 100445040 4 - TSS region transcription start site region 99139
Tssr95566 10 100485402 to 100485450 48 + TSS region transcription start site region 95566
Cpgi2158 10 100487025 to 100487925 900 CpG island CpG island 2158
Tssr99140 10 100487271 to 100487288 17 - TSS region transcription start site region 99140
Tssr99141 10 100487291 to 100487311 20 - TSS region transcription start site region 99141
Tssr99142 10 100487316 to 100487357 41 - TSS region transcription start site region 99142
Cep290 10 100487548 to 100573665 86117 + protein coding gene centrosomal protein 290
Tssr95567 10 100487573 to 100487633 60 + TSS region transcription start site region 95567
Tssr95568 10 100544391 to 100544433 42 + TSS region transcription start site region 95568
4930430F08Rik 10 100572274 to 100589387 17113 - protein coding gene RIKEN cDNA 4930430F08 gene
Gm47956 10 100577426 to 100583711 6285 + unclassified non-coding RNA gene predicted gene, 47956
Cpgi2159 10 100588844 to 100589384 540 CpG island CpG island 2159
Tssr95569 10 100589110 to 100589131 21 + TSS region transcription start site region 95569
Tssr99143 10 100589205 to 100589269 64 - TSS region transcription start site region 99143
Tssr99144 10 100590413 to 100590426 13 - TSS region transcription start site region 99144
Tssr99145 10 100590427 to 100590432 5 - TSS region transcription start site region 99145
Tssr3339 10 100590437 to 100590445 8 - TSS region transcription start site region 3339
1700017N19Rik 10 100590511 to 100618391 27880 + protein coding gene RIKEN cDNA 1700017N19 gene
Tssr95570 10 100590522 to 100590533 11 + TSS region transcription start site region 95570
Tssr95571 10 100592365 to 100592382 17 + TSS region transcription start site region 95571
Tssr95572 10 100592386 to 100592406 20 + TSS region transcription start site region 95572
Cpgi2160 10 100612820 to 100613001 181 CpG island CpG island 2160
Gm47325 10 100651630 to 100651942 312 + pseudogene predicted gene, 47325
Gm35722 10 100708375 to 100741635 33260 - lincRNA gene predicted gene, 35722
Tssr95573 10 100820894 to 100820895 1 + TSS region transcription start site region 95573
Gm19233 10 101271621 to 101272556 935 + pseudogene predicted gene, 19233
Gm26278 10 101544177 to 101544308 131 + snoRNA gene predicted gene, 26278
Mgat4c 10 101681487 to 102391469 709982 + protein coding gene MGAT4 family, member C
Tssr95574 10 101681622 to 101681662 40 + TSS region transcription start site region 95574
Tssr95575 10 101681675 to 101681686 11 + TSS region transcription start site region 95575
Tssr95576 10 101681695 to 101681720 25 + TSS region transcription start site region 95576
Tssr95577 10 101681858 to 101681873 15 + TSS region transcription start site region 95577
Gm47032 10 101730775 to 101731561 786 + unclassified gene predicted gene, 47032
Mir3059 10 101772692 to 101772772 80 + miRNA gene microRNA 3059
Tssr3340 10 101963742 to 101963743 1 - TSS region transcription start site region 3340
Tssr95578 10 102079680 to 102079683 3 + TSS region transcription start site region 95578
Tssr95579 10 102158872 to 102158889 17 + TSS region transcription start site region 95579
Tssr95580 10 102158894 to 102158916 22 + TSS region transcription start site region 95580
Tssr95581 10 102158980 to 102158997 17 + TSS region transcription start site region 95581
Tssr95582 10 102159000 to 102159018 18 + TSS region transcription start site region 95582
Tssr95583 10 102167638 to 102167642 4 + TSS region transcription start site region 95583
Tssr95584 10 102178427 to 102178429 2 + TSS region transcription start site region 95584
Tssr95585 10 102201832 to 102201836 4 + TSS region transcription start site region 95585
Tssr95586 10 102225701 to 102225705 4 + TSS region transcription start site region 95586
Gm47031 10 102319613 to 102321894 2281 + sense intronic lncRNA gene predicted gene, 47031
Tssr95587 10 102374429 to 102374445 16 + TSS region transcription start site region 95587
Tssr3341 10 102388993 to 102388998 5 + TSS region transcription start site region 3341
Gm47033 10 102415883 to 102418014 2131 + lincRNA gene predicted gene, 47033
Gm47025 10 102431908 to 102432338 430 - unclassified gene predicted gene, 47025
Gm47101 10 102435269 to 102435543 274 + lincRNA gene predicted gene, 47101
Gm26988 10 102460198 to 102461142 944 + pseudogene predicted gene, 26988
Nts 10 102481756 to 102490418 8662 - protein coding gene neurotensin
Tssr99146 10 102490425 to 102490440 15 - TSS region transcription start site region 99146
Tssr95588 10 102511773 to 102511778 5 + TSS region transcription start site region 95588
Tssr95589 10 102512032 to 102512063 31 + TSS region transcription start site region 95589
Tssr95590 10 102512083 to 102512105 22 + TSS region transcription start site region 95590
Tssr95591 10 102512216 to 102512292 76 + TSS region transcription start site region 95591
Rassf9 10 102512222 to 102549736 37514 + protein coding gene Ras association (RalGDS/AF-6) domain family (N-terminal) member 9
Tssr95592 10 102512325 to 102512338 13 + TSS region transcription start site region 95592
Tssr95593 10 102512394 to 102512409 15 + TSS region transcription start site region 95593
Tssr99147 10 102512396 to 102512417 21 - TSS region transcription start site region 99147
Tssr95594 10 102512446 to 102512458 12 + TSS region transcription start site region 95594
Tssr95595 10 102512483 to 102512521 38 + TSS region transcription start site region 95595
Tssr95596 10 102519577 to 102519582 5 + TSS region transcription start site region 95596
Tssr95597 10 102540261 to 102540281 20 + TSS region transcription start site region 95597
Tssr95598 10 102546713 to 102546718 5 + TSS region transcription start site region 95598
Gm47142 10 102683069 to 102683315 246 - pseudogene predicted gene, 47142
Gm47143 10 102683265 to 102694569 11304 + lincRNA gene predicted gene, 47143
Gm5175 10 102819320 to 102838659 19339 + pseudogene predicted gene 5175
Tssr99148 10 102836359 to 102836377 18 - TSS region transcription start site region 99148
Alx1 10 103007847 to 103029457 21610 - protein coding gene ALX homeobox 1
Cpgi2161 10 103028133 to 103028797 664 CpG island CpG island 2161
Tssr99149 10 103028603 to 103028657 54 - TSS region transcription start site region 99149
Tssr99150 10 103028771 to 103028782 11 - TSS region transcription start site region 99150
Tssr95599 10 103028943 to 103028979 36 + TSS region transcription start site region 95599
Gm34298 10 103028985 to 103032531 3546 + protein coding gene predicted gene, 34298
Tssr99151 10 103029043 to 103029053 10 - TSS region transcription start site region 99151
Tssr99152 10 103029060 to 103029080 20 - TSS region transcription start site region 99152
Cpgi2162 10 103029072 to 103029504 432 CpG island CpG island 2162
Tssr95600 10 103029132 to 103029143 11 + TSS region transcription start site region 95600
Tssr95601 10 103029166 to 103029176 10 + TSS region transcription start site region 95601
Gm17028 10 103029479 to 103030344 865 - lincRNA gene predicted gene 17028
Cpgi2163 10 103029852 to 103030359 507 CpG island CpG island 2163
Lrriq1 10 103046031 to 103236322 190291 - protein coding gene leucine-rich repeats and IQ motif containing 1
Tssr99153 10 103046302 to 103046305 3 - TSS region transcription start site region 99153
Gm25376 10 103121236 to 103121368 132 + snoRNA gene predicted gene, 25376
Tssr99154 10 103144921 to 103144930 9 - TSS region transcription start site region 99154
Tssr99155 10 103144968 to 103144979 11 - TSS region transcription start site region 99155
Tssr99156 10 103145477 to 103145492 15 - TSS region transcription start site region 99156
Gm47164 10 103207748 to 103213437 5689 - unclassified gene predicted gene, 47164
Cpgi2164 10 103236111 to 103236433 322 CpG island CpG island 2164
Tssr99157 10 103236280 to 103236327 47 - TSS region transcription start site region 99157
Tssr99158 10 103236345 to 103236354 9 - TSS region transcription start site region 99158