Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:9994089-12834146

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113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr10953 1 10009098 to 10009160 62 - TSS region transcription start site region 10953
Ppp1r42 1 10009136 to 9968624 -40512 - protein coding gene protein phosphatase 1, regulatory subunit 42
Tssr10954 1 10009161 to 10009166 5 - TSS region transcription start site region 10954
Gm24674 1 10009814 to 10009917 103 - snRNA gene predicted gene, 24674
Cops5 1 10024600 to 10038159 13559 - protein coding gene COP9 signalosome subunit 5
Cpgi31 1 10037555 to 10038443 888 CpG island CpG island 31
Tssr10955 1 10037883 to 10037894 11 - TSS region transcription start site region 10955
Tssr10956 1 10037922 to 10037931 9 - TSS region transcription start site region 10956
Tssr10957 1 10037932 to 10037968 36 - TSS region transcription start site region 10957
Tssr10958 1 10038106 to 10038169 63 - TSS region transcription start site region 10958
Cspp1 1 10038118 to 10136771 98653 + protein coding gene centrosome and spindle pole associated protein 1
Tssr4 1 10038208 to 10038228 20 + TSS region transcription start site region 4
Cpgi32 1 10039521 to 10040326 805 CpG island CpG island 32
Tssr5924 1 10039762 to 10039792 30 + TSS region transcription start site region 5924
Tssr5925 1 10039797 to 10039819 22 + TSS region transcription start site region 5925
Tssr5926 1 10039824 to 10039845 21 + TSS region transcription start site region 5926
Tssr10959 1 10040007 to 10040017 10 - TSS region transcription start site region 10959
Tssr5927 1 10056922 to 10056926 4 + TSS region transcription start site region 5927
1700047N06Rik 1 10057025 to 10057944 919 - unclassified gene RIKEN cDNA 1700047N06 gene
Tssr10960 1 10057921 to 10057945 24 - TSS region transcription start site region 10960
Tssr5928 1 10059260 to 10059266 6 + TSS region transcription start site region 5928
Arfgef1 1 10137571 to 10232670 95099 - protein coding gene ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)
Tssr10961 1 10162224 to 10162247 23 - TSS region transcription start site region 10961
Gm26348 1 10166539 to 10166778 239 + unclassified non-coding RNA gene predicted gene, 26348
Tssr10962 1 10180945 to 10180957 12 - TSS region transcription start site region 10962
Gm37569 1 10197081 to 10198802 1721 - unclassified gene predicted gene, 37569
Tssr10963 1 10214245 to 10214258 13 - TSS region transcription start site region 10963
Tssr10964 1 10230771 to 10230775 4 - TSS region transcription start site region 10964
Cpgi33 1 10231986 to 10233512 1526 CpG island CpG island 33
Tssr5 1 10232933 to 10232938 5 - TSS region transcription start site region 5
Tssr10965 1 10232968 to 10233000 32 - TSS region transcription start site region 10965
Tssr10966 1 10233007 to 10233020 13 - TSS region transcription start site region 10966
Tssr10967 1 10233047 to 10233093 46 - TSS region transcription start site region 10967
Tssr6 1 10233047 to 10233056 9 + TSS region transcription start site region 6
Tssr10968 1 10233111 to 10233122 11 - TSS region transcription start site region 10968
Tssr5929 1 10260328 to 10260334 6 + TSS region transcription start site region 5929
Tssr7 1 10261684 to 10261719 35 + TSS region transcription start site region 7
Tssr5930 1 10284900 to 10284926 26 + TSS region transcription start site region 5930
Tssr8 1 10315270 to 10315286 16 + TSS region transcription start site region 8
Cpa6 1 10324720 to 10719945 395225 - protein coding gene carboxypeptidase A6
Tssr9 1 10335550 to 10335554 4 + TSS region transcription start site region 9
D1Mit316 1 10380460 to 10380607 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 316
Gm38005 1 10449245 to 10451989 2744 - unclassified gene predicted gene, 38005
Gm15604 1 10554007 to 10554376 369 - pseudogene predicted gene 15604
Gm25253 1 10555554 to 10555660 106 - snRNA gene predicted gene, 25253
Gm15603 1 10695123 to 10695614 491 + pseudogene predicted gene 15603
Tssr10969 1 10719898 to 10719939 41 - TSS region transcription start site region 10969
Gm37133 1 10782456 to 10784377 1921 - unclassified gene predicted gene, 37133
Gm5522 1 10805281 to 10806522 1241 + pseudogene predicted gene 5522
Gm28659 1 10868688 to 10869446 758 + pseudogene predicted gene 28659
Tssr5931 1 10878612 to 10878615 3 + TSS region transcription start site region 5931
Tssr5932 1 10880285 to 10880291 6 + TSS region transcription start site region 5932
Gm22963 1 10921670 to 10921760 90 + snoRNA gene predicted gene, 22963
Cpgi34 1 10993263 to 10994110 847 CpG island CpG island 34
Tssr5933 1 10993307 to 10993331 24 + TSS region transcription start site region 5933
Tssr5934 1 10993365 to 10993375 10 + TSS region transcription start site region 5934
Tssr5935 1 10993452 to 10993478 26 + TSS region transcription start site region 5935
Prex2 1 10993465 to 11303681 310216 + protein coding gene phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
Tssr5936 1 10993482 to 10993620 138 + TSS region transcription start site region 5936
Tssr5937 1 10998699 to 10998707 8 + TSS region transcription start site region 5937
Tssr5938 1 11004523 to 11004525 2 + TSS region transcription start site region 5938
Tssr5939 1 11089657 to 11089669 12 + TSS region transcription start site region 5939
Tssr5940 1 11089738 to 11089753 15 + TSS region transcription start site region 5940
Tssr5941 1 11089757 to 11089763 6 + TSS region transcription start site region 5941
Tssr5942 1 11089768 to 11089774 6 + TSS region transcription start site region 5942
Gm24173 1 11134111 to 11134238 127 - snoRNA gene predicted gene, 24173
Tssr5943 1 11185254 to 11185258 4 + TSS region transcription start site region 5943
Gm28686 1 11223566 to 11224174 608 - pseudogene predicted gene 28686
Tssr5944 1 11299452 to 11299482 30 + TSS region transcription start site region 5944
Cpgi35 1 11329553 to 11329766 213 CpG island CpG island 35
Gm37410 1 11363926 to 11366964 3038 - unclassified gene predicted gene, 37410
Tssr10970 1 11395462 to 11395499 37 - TSS region transcription start site region 10970
Tssr10971 1 11401271 to 11401277 6 - TSS region transcription start site region 10971
Cpgi36 1 11413874 to 11414618 744 CpG island CpG island 36
Tssr5945 1 11414089 to 11414146 57 + TSS region transcription start site region 5945
A830018L16Rik 1 11414105 to 11975901 561796 + protein coding gene RIKEN cDNA A830018L16 gene
Tssr5946 1 11414184 to 11414248 64 + TSS region transcription start site region 5946
Tssr5947 1 11414265 to 11414331 66 + TSS region transcription start site region 5947
Gm38178 1 11416918 to 11419388 2470 + unclassified gene predicted gene, 38178
D1Mit429 1 11499312 to 11499412 100 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 429
D1Mit1 1 11515502 to 11515626 124 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1
Gm29273 1 11608139 to 11608400 261 - pseudogene predicted gene 29273
Gm38069 1 11704207 to 11706350 2143 + unclassified gene predicted gene, 38069
D1Mit294 1 11741307 to 11741452 145 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 294
Gm30898 1 11979540 to 11991123 11583 + lncRNA gene predicted gene, 30898
Gm30974 1 12029084 to 12061033 31949 - lncRNA gene predicted gene, 30974
Gm7560 1 12120960 to 12121832 872 + pseudogene predicted gene 7560
D1Mit160.1 1 12125630 to 12125765 135 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 160.1
D1Mit160 1 12125786 to 12125924 138 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 160
Gm22633 1 12374936 to 12375042 106 + snRNA gene predicted gene, 22633
Gm39591 1 12423687 to 12432474 8787 - lncRNA gene predicted gene, 39591
Mir6341 1 12425986 to 12426106 120 + miRNA gene microRNA 6341
Gm2383 1 12565577 to 12566383 806 + pseudogene predicted gene 2383
Tssr10 1 12615768 to 12615770 2 + TSS region transcription start site region 10
D1Mit275 1 12633679 to 12633766 87 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 275
Gm6216 1 12655867 to 12656553 686 + pseudogene predicted gene 6216
Gm17644 1 12667563 to 12673090 5527 + lincRNA gene predicted gene, 17644
Gm29663 1 12670324 to 12671176 852 - lincRNA gene predicted gene 29663
Sulf1 1 12692277 to 12861192 168915 + protein coding gene sulfatase 1
Tssr5948 1 12692358 to 12692365 7 + TSS region transcription start site region 5948
Tssr5949 1 12692405 to 12692419 14 + TSS region transcription start site region 5949
Tssr5950 1 12692433 to 12692485 52 + TSS region transcription start site region 5950
Tssr5951 1 12692489 to 12692539 50 + TSS region transcription start site region 5951
Tssr5952 1 12692542 to 12692554 12 + TSS region transcription start site region 5952
Tssr5953 1 12692569 to 12692585 16 + TSS region transcription start site region 5953
Tssr10972 1 12693371 to 12693396 25 - TSS region transcription start site region 10972
Tssr5954 1 12718496 to 12718513 17 + TSS region transcription start site region 5954
Tssr5955 1 12718673 to 12718753 80 + TSS region transcription start site region 5955
Tssr5956 1 12725373 to 12725374 1 + TSS region transcription start site region 5956
Tssr5957 1 12744775 to 12744782 7 + TSS region transcription start site region 5957
Tssr5958 1 12772134 to 12772137 3 + TSS region transcription start site region 5958
Tssr5959 1 12807848 to 12807887 39 + TSS region transcription start site region 5959
Tssr10973 1 12814449 to 12814457 8 - TSS region transcription start site region 10973