Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:9808638-10042085

44 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Sgk3	1	9798107 to 9900845	102738	+	protein coding gene	serum/glucocorticoid regulated kinase 3
Gm22607	1	9834498 to 9834602	104	-	snRNA gene	predicted gene, 22607
Tssr5917	1	9836048 to 9836052	4	+	TSS region	transcription start site region 5917
Cpgi28	1	9848038 to 9848775	737		CpG island	CpG island 28
Tssr5918	1	9848270 to 9848285	15	+	TSS region	transcription start site region 5918
Tssr5919	1	9848294 to 9848362	68	+	TSS region	transcription start site region 5919
Tssr5920	1	9848375 to 9848398	23	+	TSS region	transcription start site region 5920
Gm2352	1	9901944 to 9902558	614	+	pseudogene	predicted gene 2352
Mcmdc2	1	9908638 to 9942085	33447	+	protein coding gene	minichromosome maintenance domain containing 2
Tssr5921	1	9908654 to 9908669	15	+	TSS region	transcription start site region 5921
Tssr5922	1	9908679 to 9908686	7	+	TSS region	transcription start site region 5922
Tssr5923	1	9932092 to 9932107	15	+	TSS region	transcription start site region 5923
Snhg6	1	9942025 to 9944118	2093	-	lincRNA gene	small nucleolar RNA host gene 6
Tssr10945	1	9942155 to 9942167	12	-	TSS region	transcription start site region 10945
Snord87	1	9942470 to 9942543	73	-	snoRNA gene	small nucleolar RNA, C/D box 87
Tssr10946	1	9942537 to 9942550	13	-	TSS region	transcription start site region 10946
Tssr10947	1	9943590 to 9943608	18	-	TSS region	transcription start site region 10947
Cpgi29	1	9943688 to 9944485	797		CpG island	CpG island 29
Tssr10948	1	9944087 to 9944090	3	-	TSS region	transcription start site region 10948
Tssr10949	1	9944104 to 9944127	23	-	TSS region	transcription start site region 10949
Tcf24	1	9960163 to 9967932	7769	-	protein coding gene	transcription factor 24
Cpgi30	1	9966928 to 9968423	1495		CpG island	CpG island 30
E330040D14Rik	1	9967314 to 9968687	1373	+	unclassified gene	RIKEN cDNA E330040D14 gene
Tssr10950	1	9967805 to 9967815	10	-	TSS region	transcription start site region 10950
Gm15818	1	9982387 to 9992366	9979	+	antisense lncRNA gene	predicted gene 15818
Tssr10951	1	9991919 to 9991930	11	-	TSS region	transcription start site region 10951
Tssr10952	1	9991936 to 9991949	13	-	TSS region	transcription start site region 10952
Tssr10953	1	10009098 to 10009160	62	-	TSS region	transcription start site region 10953
Ppp1r42	1	10009136 to 9968624	-40512	-	protein coding gene	protein phosphatase 1, regulatory subunit 42
Tssr10954	1	10009161 to 10009166	5	-	TSS region	transcription start site region 10954
Gm24674	1	10009814 to 10009917	103	-	snRNA gene	predicted gene, 24674
Cops5	1	10024600 to 10038159	13559	-	protein coding gene	COP9 signalosome subunit 5
Cpgi31	1	10037555 to 10038443	888		CpG island	CpG island 31
Tssr10955	1	10037883 to 10037894	11	-	TSS region	transcription start site region 10955
Tssr10956	1	10037922 to 10037931	9	-	TSS region	transcription start site region 10956
Tssr10957	1	10037932 to 10037968	36	-	TSS region	transcription start site region 10957
Tssr10958	1	10038106 to 10038169	63	-	TSS region	transcription start site region 10958
Cspp1	1	10038118 to 10136771	98653	+	protein coding gene	centrosome and spindle pole associated protein 1
Tssr4	1	10038208 to 10038228	20	+	TSS region	transcription start site region 4
Cpgi32	1	10039521 to 10040326	805		CpG island	CpG island 32
Tssr5924	1	10039762 to 10039792	30	+	TSS region	transcription start site region 5924
Tssr5925	1	10039797 to 10039819	22	+	TSS region	transcription start site region 5925
Tssr5926	1	10039824 to 10039845	21	+	TSS region	transcription start site region 5926
Tssr10959	1	10040007 to 10040017	10	-	TSS region	transcription start site region 10959