Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:98012074-103182622

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pam 1 97821091 to 98095658 274567 - protein coding gene peptidylglycine alpha-amidating monooxygenase
B230216N24Rik 1 98031123 to 98047793 16670 - lncRNA gene RIKEN cDNA B230216N24 gene
Tssr13102 1 98047716 to 98047727 11 - TSS region transcription start site region 13102
Tssr13103 1 98047728 to 98047792 64 - TSS region transcription start site region 13103
Tssr13104 1 98047793 to 98047817 24 - TSS region transcription start site region 13104
Gm24465 1 98049822 to 98049928 106 + snRNA gene predicted gene, 24465
Tssr13105 1 98057701 to 98057712 11 - TSS region transcription start site region 13105
Tssr13106 1 98057716 to 98057732 16 - TSS region transcription start site region 13106
Tssr8233 1 98060307 to 98060309 2 + TSS region transcription start site region 8233
Cpgi621 1 98094813 to 98096319 1506 CpG island CpG island 621
Tssr13107 1 98095506 to 98095533 27 - TSS region transcription start site region 13107
Tssr13108 1 98095538 to 98095553 15 - TSS region transcription start site region 13108
Tssr13109 1 98095574 to 98095592 18 - TSS region transcription start site region 13109
Tssr13110 1 98095596 to 98095648 52 - TSS region transcription start site region 13110
Tssr8234 1 98131444 to 98131458 14 + TSS region transcription start site region 8234
1810006J02Rik 1 98131467 to 98144655 13188 + lincRNA gene RIKEN cDNA 1810006J02 gene
Tssr8235 1 98131470 to 98131499 29 + TSS region transcription start site region 8235
Gm29461 1 98173648 to 98190698 17050 + lincRNA gene predicted gene 29461
Gm7952 1 98263473 to 98264235 762 + pseudogene predicted gene 7952
Gm29462 1 98267151 to 98267438 287 + pseudogene predicted gene 29462
Gm46078 1 98289553 to 98292969 3416 + pseudogene predicted gene, 46078
Tssr169 1 98349893 to 98349894 1 + TSS region transcription start site region 169
Tssr8236 1 98421092 to 98421134 42 + TSS region transcription start site region 8236
Slco6d1 1 98421124 to 98516991 95867 + protein coding gene solute carrier organic anion transporter family, member 6d1
Tssr8237 1 98457715 to 98457748 33 + TSS region transcription start site region 8237
Gm3555 1 98457768 to 98459162 1394 + pseudogene predicted pseudogene 3555
D1Mit11 1 98547060 to 98547159 99 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 11
Gm26134 1 98549451 to 98549560 109 + miRNA gene predicted gene, 26134
Gm7967 1 98589517 to 98607384 17867 + lincRNA gene predicted gene 7967
Tssr8238 1 98693476 to 98693495 19 + TSS region transcription start site region 8238
Gm29460 1 98764841 to 98765554 713 + pseudogene predicted gene 29460
Gm23434 1 99017364 to 99017463 99 + snRNA gene predicted gene, 23434
D1Mit157 1 99614988 to 99615136 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 157
Gm18248 1 99638396 to 99640241 1845 - pseudogene predicted gene, 18248
Tssr13111 1 99650442 to 99650444 2 - TSS region transcription start site region 13111
D1Mit257 1 99749097 to 99749230 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 257
Tssr8239 1 99772394 to 99772408 14 + TSS region transcription start site region 8239
Tssr8240 1 99772429 to 99772438 9 + TSS region transcription start site region 8240
Tssr8241 1 99790200 to 99790203 3 + TSS region transcription start site region 8241
Prdx2-ps1 1 99790429 to 99791025 596 - pseudogene peroxiredoxin 2, pseudogene 1
Tssr13112 1 99791090 to 99791102 12 - TSS region transcription start site region 13112
Tssr13113 1 99791821 to 99791843 22 - TSS region transcription start site region 13113
Gm37877 1 99847984 to 99850692 2708 + unclassified gene predicted gene, 37877
Aath7 1 99904910 to 99904910 0 QTL aortic arch atherosclerosis 7
Alpq5 1 99904910 to 99904910 0 QTL alcohol preference QTL 5
D1Mit85 1 99936667 to 99936802 135 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 85
D1Mit385 1 99965618 to 99965737 119 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 385
Gm19029 1 100006021 to 100006584 563 + pseudogene predicted gene, 19029
Tssr8242 1 100042783 to 100042784 1 + TSS region transcription start site region 8242
Tssr13114 1 100180147 to 100180185 38 - TSS region transcription start site region 13114
Tssr13115 1 100180207 to 100180245 38 - TSS region transcription start site region 13115
Tssr13116 1 100180262 to 100180308 46 - TSS region transcription start site region 13116
Tssr13117 1 100180377 to 100180388 11 - TSS region transcription start site region 13117
Gm41923 1 100249987 to 100252508 2521 - lncRNA gene predicted gene, 41923
Tssr13118 1 100252501 to 100252519 18 - TSS region transcription start site region 13118
Tssr8243 1 100252618 to 100252634 16 + TSS region transcription start site region 8243
Tssr8244 1 100252648 to 100252658 10 + TSS region transcription start site region 8244
Gm23602 1 100252917 to 100253048 131 - snoRNA gene predicted gene, 23602
Gm29668 1 100282329 to 100282643 314 - pseudogene predicted gene 29668
Gm29667 1 100282791 to 100283280 489 + pseudogene predicted gene 29667
D1Mit386 1 100400482 to 100400577 95 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 386
D1Mit186 1 100454342 to 100454625 283 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 186
Cntnap5b 1 100485942 to 99772765 -713177 + protein coding gene contactin associated protein-like 5B
Reb1 1 100485942 to 91540544 -8945398 QTL repetitive behavior 1
Gm18700 1 100597074 to 100597622 548 + pseudogene predicted gene, 18700
Gm18185 1 100643582 to 100644248 666 + pseudogene predicted gene, 18185
Gm29334 1 100653800 to 100654156 356 + pseudogene predicted gene 29334
Gm46243 1 100777850 to 100783402 5552 - pseudogene predicted gene, 46243
Gm25537 1 100861793 to 100861901 108 + miRNA gene predicted gene, 25537
Tssr8245 1 101155763 to 101155782 19 + TSS region transcription start site region 8245
Tssr8246 1 101155788 to 101155804 16 + TSS region transcription start site region 8246
Gm20268 1 101155809 to 101175202 19393 + lincRNA gene predicted gene, 20268
Tssr8247 1 101231851 to 101231856 5 + TSS region transcription start site region 8247
Gm31973 1 101262730 to 101280206 17476 + lncRNA gene predicted gene, 31973
Tssr8248 1 101302414 to 101302426 12 + TSS region transcription start site region 8248
Gm28801 1 101371628 to 101372076 448 + pseudogene predicted gene 28801
Psmb6-ps2 1 101385886 to 101386590 704 + pseudogene proteasome (prosome, macropain) subunit, beta type 6, pseudogene 2
Tssr8249 1 101487662 to 101487663 1 + TSS region transcription start site region 8249
Tssr170 1 101608391 to 101608397 6 + TSS region transcription start site region 170
D1Dcr43 1 101662986 to 101663086 100 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 43
D1Ertd62e 1 101752513 to 101752742 229 unclassified gene DNA segment, Chr 1, ERATO Doi 62, expressed
Gm18969 1 101753814 to 101754543 729 - pseudogene predicted gene, 18969
Gm28188 1 101880506 to 101880741 235 - pseudogene predicted gene 28188
Gm28187 1 101892958 to 101895091 2133 - lincRNA gene predicted gene 28187
Tssr13119 1 101895862 to 101895909 47 - TSS region transcription start site region 13119
D1Dcr44 1 101912004 to 101912102 98 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 44
D1Mit136 1 101998150 to 101998252 102 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 136
Gm24122 1 102106449 to 102106580 131 - snoRNA gene predicted gene, 24122
Gm28623 1 102161367 to 102161939 572 + pseudogene predicted gene 28623
Tssr13120 1 102189077 to 102189084 7 - TSS region transcription start site region 13120
Gm23036 1 102413923 to 102414021 98 - snoRNA gene predicted gene, 23036
Gm3116 1 102449353 to 102537656 88303 + pseudogene predicted gene 3116
Gm20281 1 102458656 to 102458922 266 - pseudogene predicted gene, 20281
D1Mit86 1 102581465 to 102581623 158 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 86
Tssr13121 1 102628196 to 102628234 38 - TSS region transcription start site region 13121
Tssr13122 1 102628264 to 102628293 29 - TSS region transcription start site region 13122
Gm22034 1 102953415 to 102953548 133 - snoRNA gene predicted gene, 22034
Gm18728 1 103171926 to 103268593 96667 + pseudogene predicted gene, 18728
Leusq5 1 126458780 to 98547060 -27911720 QTL leucocytosis susceptibility QTL 5