Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:97772364-100262463

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gin1 1 97770172 to 97793709 23537 + protein coding gene gypsy retrotransposon integrase 1
Pam 1 97821091 to 98095658 274567 - protein coding gene peptidylglycine alpha-amidating monooxygenase
Tssr13086 1 97821441 to 97821446 5 - TSS region transcription start site region 13086
Tssr13087 1 97822998 to 97823015 17 - TSS region transcription start site region 13087
Gm37140 1 97878382 to 97880065 1683 - unclassified gene predicted gene, 37140
Tssr13088 1 97885652 to 97885662 10 - TSS region transcription start site region 13088
Tssr13089 1 97908615 to 97908619 4 - TSS region transcription start site region 13089
Tssr13090 1 97910722 to 97910744 22 - TSS region transcription start site region 13090
Tssr13091 1 97910745 to 97910775 30 - TSS region transcription start site region 13091
Gm31771 1 97911103 to 97924920 13817 + lncRNA gene predicted gene, 31771
Gm25413 1 97936400 to 97936711 311 + unclassified non-coding RNA gene predicted gene, 25413
Gm3531 1 97948901 to 97949389 488 - pseudogene predicted pseudogene 3531
Tssr13092 1 97949502 to 97949506 4 - TSS region transcription start site region 13092
Cpgi620 1 97976768 to 97977435 667 CpG island CpG island 620
Tssr13093 1 97976955 to 97976991 36 - TSS region transcription start site region 13093
Tssr13094 1 97977034 to 97977058 24 - TSS region transcription start site region 13094
Tssr13095 1 97977061 to 97977113 52 - TSS region transcription start site region 13095
Tssr13096 1 97977138 to 97977202 64 - TSS region transcription start site region 13096
Tssr13097 1 97977210 to 97977227 17 - TSS region transcription start site region 13097
Tssr13098 1 97977233 to 97977279 46 - TSS region transcription start site region 13098
Tssr13099 1 97977284 to 97977298 14 - TSS region transcription start site region 13099
Tssr13100 1 97977302 to 97977332 30 - TSS region transcription start site region 13100
Tssr13101 1 97977338 to 97977398 60 - TSS region transcription start site region 13101
B230216N24Rik 1 98031123 to 98047793 16670 - lncRNA gene RIKEN cDNA B230216N24 gene
Tssr13102 1 98047716 to 98047727 11 - TSS region transcription start site region 13102
Tssr13103 1 98047728 to 98047792 64 - TSS region transcription start site region 13103
Tssr13104 1 98047793 to 98047817 24 - TSS region transcription start site region 13104
Gm24465 1 98049822 to 98049928 106 + snRNA gene predicted gene, 24465
Tssr13105 1 98057701 to 98057712 11 - TSS region transcription start site region 13105
Tssr13106 1 98057716 to 98057732 16 - TSS region transcription start site region 13106
Tssr8233 1 98060307 to 98060309 2 + TSS region transcription start site region 8233
Cpgi621 1 98094813 to 98096319 1506 CpG island CpG island 621
Tssr13107 1 98095506 to 98095533 27 - TSS region transcription start site region 13107
Tssr13108 1 98095538 to 98095553 15 - TSS region transcription start site region 13108
Tssr13109 1 98095574 to 98095592 18 - TSS region transcription start site region 13109
Tssr13110 1 98095596 to 98095648 52 - TSS region transcription start site region 13110
Tssr8234 1 98131444 to 98131458 14 + TSS region transcription start site region 8234
1810006J02Rik 1 98131467 to 98144655 13188 + lincRNA gene RIKEN cDNA 1810006J02 gene
Tssr8235 1 98131470 to 98131499 29 + TSS region transcription start site region 8235
Gm29461 1 98173648 to 98190698 17050 + lincRNA gene predicted gene 29461
Gm7952 1 98263473 to 98264235 762 + pseudogene predicted gene 7952
Gm29462 1 98267151 to 98267438 287 + pseudogene predicted gene 29462
Gm46078 1 98289553 to 98292969 3416 + pseudogene predicted gene, 46078
Tssr169 1 98349893 to 98349894 1 + TSS region transcription start site region 169
Tssr8236 1 98421092 to 98421134 42 + TSS region transcription start site region 8236
Slco6d1 1 98421124 to 98516991 95867 + protein coding gene solute carrier organic anion transporter family, member 6d1
Tssr8237 1 98457715 to 98457748 33 + TSS region transcription start site region 8237
Gm3555 1 98457768 to 98459162 1394 + pseudogene predicted pseudogene 3555
D1Mit11 1 98547060 to 98547159 99 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 11
Gm26134 1 98549451 to 98549560 109 + miRNA gene predicted gene, 26134
Gm7967 1 98589517 to 98607384 17867 + lincRNA gene predicted gene 7967
Tssr8238 1 98693476 to 98693495 19 + TSS region transcription start site region 8238
Gm29460 1 98764841 to 98765554 713 + pseudogene predicted gene 29460
Gm23434 1 99017364 to 99017463 99 + snRNA gene predicted gene, 23434
D1Mit157 1 99614988 to 99615136 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 157
Gm18248 1 99638396 to 99640241 1845 - pseudogene predicted gene, 18248
Tssr13111 1 99650442 to 99650444 2 - TSS region transcription start site region 13111
D1Mit257 1 99749097 to 99749230 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 257
Tssr8239 1 99772394 to 99772408 14 + TSS region transcription start site region 8239
Tssr8240 1 99772429 to 99772438 9 + TSS region transcription start site region 8240
Tssr8241 1 99790200 to 99790203 3 + TSS region transcription start site region 8241
Prdx2-ps1 1 99790429 to 99791025 596 - pseudogene peroxiredoxin 2, pseudogene 1
Tssr13112 1 99791090 to 99791102 12 - TSS region transcription start site region 13112
Tssr13113 1 99791821 to 99791843 22 - TSS region transcription start site region 13113
Gm37877 1 99847984 to 99850692 2708 + unclassified gene predicted gene, 37877
Alpq5 1 99904910 to 99904910 0 QTL alcohol preference QTL 5
Aath7 1 99904910 to 99904910 0 QTL aortic arch atherosclerosis 7
D1Mit85 1 99936667 to 99936802 135 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 85
D1Mit385 1 99965618 to 99965737 119 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 385
Gm19029 1 100006021 to 100006584 563 + pseudogene predicted gene, 19029
Tssr8242 1 100042783 to 100042784 1 + TSS region transcription start site region 8242
Tssr13114 1 100180147 to 100180185 38 - TSS region transcription start site region 13114
Tssr13115 1 100180207 to 100180245 38 - TSS region transcription start site region 13115
Tssr13116 1 100180262 to 100180308 46 - TSS region transcription start site region 13116
Tssr13117 1 100180377 to 100180388 11 - TSS region transcription start site region 13117
Gm41923 1 100249987 to 100252508 2521 - lncRNA gene predicted gene, 41923
Tssr13118 1 100252501 to 100252519 18 - TSS region transcription start site region 13118
Tssr8243 1 100252618 to 100252634 16 + TSS region transcription start site region 8243
Tssr8244 1 100252648 to 100252658 10 + TSS region transcription start site region 8244
Gm23602 1 100252917 to 100253048 131 - snoRNA gene predicted gene, 23602
Cntnap5b 1 100485942 to 99772765 -713177 + protein coding gene contactin associated protein-like 5B
Leusq5 1 126458780 to 98547060 -27911720 QTL leucocytosis susceptibility QTL 5