Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:9749087-10139090

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1700034P13Rik 1 9747648 to 9771256 23608 + antisense lncRNA gene RIKEN cDNA 1700034P13 gene
D1Mit296 1 9749730 to 9749873 143 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 296
D1Mit58 1 9757119 to 9757372 253 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 58
D1Mit58.2 1 9757246 to 9757363 117 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 58.2
Tssr5907 1 9759104 to 9759112 8 + TSS region transcription start site region 5907
Gm39590 1 9775558 to 9791319 15761 + lncRNA gene predicted gene, 39590
Tssr5908 1 9783723 to 9783735 12 + TSS region transcription start site region 5908
Tssr5909 1 9788396 to 9788407 11 + TSS region transcription start site region 5909
Tssr5910 1 9788409 to 9788420 11 + TSS region transcription start site region 5910
Cpgi27 1 9797682 to 9798751 1069 CpG island CpG island 27
Tssr5911 1 9797795 to 9797809 14 + TSS region transcription start site region 5911
Tssr5912 1 9797812 to 9797823 11 + TSS region transcription start site region 5912
Tssr5913 1 9797986 to 9798040 54 + TSS region transcription start site region 5913
Sgk3 1 9798107 to 9900845 102738 + protein coding gene serum/glucocorticoid regulated kinase 3
Tssr5914 1 9798123 to 9798216 93 + TSS region transcription start site region 5914
Tssr10943 1 9798985 to 9798996 11 - TSS region transcription start site region 10943
Tssr5915 1 9799172 to 9799220 48 + TSS region transcription start site region 5915
Tssr10944 1 9799351 to 9799373 22 - TSS region transcription start site region 10944
Gm6195 1 9802197 to 9802553 356 - pseudogene predicted pseudogene 6195
Tssr5916 1 9807006 to 9807014 8 + TSS region transcription start site region 5916
Gm22607 1 9834498 to 9834602 104 - snRNA gene predicted gene, 22607
Tssr5917 1 9836048 to 9836052 4 + TSS region transcription start site region 5917
Cpgi28 1 9848038 to 9848775 737 CpG island CpG island 28
Tssr5918 1 9848270 to 9848285 15 + TSS region transcription start site region 5918
Tssr5919 1 9848294 to 9848362 68 + TSS region transcription start site region 5919
Tssr5920 1 9848375 to 9848398 23 + TSS region transcription start site region 5920
Gm2352 1 9901944 to 9902558 614 + pseudogene predicted gene 2352
Mcmdc2 1 9908638 to 9942085 33447 + protein coding gene minichromosome maintenance domain containing 2
Tssr5921 1 9908654 to 9908669 15 + TSS region transcription start site region 5921
Tssr5922 1 9908679 to 9908686 7 + TSS region transcription start site region 5922
Tssr5923 1 9932092 to 9932107 15 + TSS region transcription start site region 5923
Snhg6 1 9942025 to 9944118 2093 - lincRNA gene small nucleolar RNA host gene 6
Tssr10945 1 9942155 to 9942167 12 - TSS region transcription start site region 10945
Snord87 1 9942470 to 9942543 73 - snoRNA gene small nucleolar RNA, C/D box 87
Tssr10946 1 9942537 to 9942550 13 - TSS region transcription start site region 10946
Tssr10947 1 9943590 to 9943608 18 - TSS region transcription start site region 10947
Cpgi29 1 9943688 to 9944485 797 CpG island CpG island 29
Tssr10948 1 9944087 to 9944090 3 - TSS region transcription start site region 10948
Tssr10949 1 9944104 to 9944127 23 - TSS region transcription start site region 10949
Tcf24 1 9960163 to 9967932 7769 - protein coding gene transcription factor 24
Cpgi30 1 9966928 to 9968423 1495 CpG island CpG island 30
E330040D14Rik 1 9967314 to 9968687 1373 + unclassified gene RIKEN cDNA E330040D14 gene
Tssr10950 1 9967805 to 9967815 10 - TSS region transcription start site region 10950
Gm15818 1 9982387 to 9992366 9979 + antisense lncRNA gene predicted gene 15818
Tssr10951 1 9991919 to 9991930 11 - TSS region transcription start site region 10951
Tssr10952 1 9991936 to 9991949 13 - TSS region transcription start site region 10952
Tssr10953 1 10009098 to 10009160 62 - TSS region transcription start site region 10953
Ppp1r42 1 10009136 to 9968624 -40512 - protein coding gene protein phosphatase 1, regulatory subunit 42
Tssr10954 1 10009161 to 10009166 5 - TSS region transcription start site region 10954
Gm24674 1 10009814 to 10009917 103 - snRNA gene predicted gene, 24674
Cops5 1 10024600 to 10038159 13559 - protein coding gene COP9 signalosome subunit 5
Cpgi31 1 10037555 to 10038443 888 CpG island CpG island 31
Tssr10955 1 10037883 to 10037894 11 - TSS region transcription start site region 10955
Tssr10956 1 10037922 to 10037931 9 - TSS region transcription start site region 10956
Tssr10957 1 10037932 to 10037968 36 - TSS region transcription start site region 10957
Tssr10958 1 10038106 to 10038169 63 - TSS region transcription start site region 10958
Cspp1 1 10038118 to 10136771 98653 + protein coding gene centrosome and spindle pole associated protein 1
Tssr4 1 10038208 to 10038228 20 + TSS region transcription start site region 4
Cpgi32 1 10039521 to 10040326 805 CpG island CpG island 32
Tssr5924 1 10039762 to 10039792 30 + TSS region transcription start site region 5924
Tssr5925 1 10039797 to 10039819 22 + TSS region transcription start site region 5925
Tssr5926 1 10039824 to 10039845 21 + TSS region transcription start site region 5926
Tssr10959 1 10040007 to 10040017 10 - TSS region transcription start site region 10959
Tssr5927 1 10056922 to 10056926 4 + TSS region transcription start site region 5927
1700047N06Rik 1 10057025 to 10057944 919 - unclassified gene RIKEN cDNA 1700047N06 gene
Tssr10960 1 10057921 to 10057945 24 - TSS region transcription start site region 10960
Tssr5928 1 10059260 to 10059266 6 + TSS region transcription start site region 5928
Arfgef1 1 10137571 to 10232670 95099 - protein coding gene ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)