Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:9738270-9958285

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49 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vcpip1 1 9718622 to 9748382 29760 - protein coding gene valosin containing protein (p97)/p47 complex interacting protein 1
Tssr10935 1 9745571 to 9745598 27 - TSS region transcription start site region 10935
Tssr10936 1 9746493 to 9746513 20 - TSS region transcription start site region 10936
Cpgi26 1 9747453 to 9748748 1295 CpG island CpG island 26
1700034P13Rik 1 9747648 to 9771256 23608 + antisense lncRNA gene RIKEN cDNA 1700034P13 gene
Tssr10937 1 9748227 to 9748243 16 - TSS region transcription start site region 10937
Tssr10938 1 9748247 to 9748272 25 - TSS region transcription start site region 10938
Tssr10939 1 9748277 to 9748320 43 - TSS region transcription start site region 10939
Tssr10940 1 9748330 to 9748353 23 - TSS region transcription start site region 10940
Tssr10941 1 9748355 to 9748367 12 - TSS region transcription start site region 10941
Tssr10942 1 9748376 to 9748451 75 - TSS region transcription start site region 10942
D1Mit296 1 9749730 to 9749873 143 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 296
D1Mit58 1 9757119 to 9757372 253 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 58
D1Mit58.2 1 9757246 to 9757363 117 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 58.2
Tssr5907 1 9759104 to 9759112 8 + TSS region transcription start site region 5907
Gm39590 1 9775558 to 9791319 15761 + lncRNA gene predicted gene, 39590
Tssr5908 1 9783723 to 9783735 12 + TSS region transcription start site region 5908
Tssr5909 1 9788396 to 9788407 11 + TSS region transcription start site region 5909
Tssr5910 1 9788409 to 9788420 11 + TSS region transcription start site region 5910
Cpgi27 1 9797682 to 9798751 1069 CpG island CpG island 27
Tssr5911 1 9797795 to 9797809 14 + TSS region transcription start site region 5911
Tssr5912 1 9797812 to 9797823 11 + TSS region transcription start site region 5912
Tssr5913 1 9797986 to 9798040 54 + TSS region transcription start site region 5913
Sgk3 1 9798107 to 9900845 102738 + protein coding gene serum/glucocorticoid regulated kinase 3
Tssr5914 1 9798123 to 9798216 93 + TSS region transcription start site region 5914
Tssr10943 1 9798985 to 9798996 11 - TSS region transcription start site region 10943
Tssr5915 1 9799172 to 9799220 48 + TSS region transcription start site region 5915
Tssr10944 1 9799351 to 9799373 22 - TSS region transcription start site region 10944
Gm6195 1 9802197 to 9802553 356 - pseudogene predicted pseudogene 6195
Tssr5916 1 9807006 to 9807014 8 + TSS region transcription start site region 5916
Gm22607 1 9834498 to 9834602 104 - snRNA gene predicted gene, 22607
Tssr5917 1 9836048 to 9836052 4 + TSS region transcription start site region 5917
Cpgi28 1 9848038 to 9848775 737 CpG island CpG island 28
Tssr5918 1 9848270 to 9848285 15 + TSS region transcription start site region 5918
Tssr5919 1 9848294 to 9848362 68 + TSS region transcription start site region 5919
Tssr5920 1 9848375 to 9848398 23 + TSS region transcription start site region 5920
Gm2352 1 9901944 to 9902558 614 + pseudogene predicted gene 2352
Mcmdc2 1 9908638 to 9942085 33447 + protein coding gene minichromosome maintenance domain containing 2
Tssr5921 1 9908654 to 9908669 15 + TSS region transcription start site region 5921
Tssr5922 1 9908679 to 9908686 7 + TSS region transcription start site region 5922
Tssr5923 1 9932092 to 9932107 15 + TSS region transcription start site region 5923
Snhg6 1 9942025 to 9944118 2093 - lincRNA gene small nucleolar RNA host gene 6
Tssr10945 1 9942155 to 9942167 12 - TSS region transcription start site region 10945
Snord87 1 9942470 to 9942543 73 - snoRNA gene small nucleolar RNA, C/D box 87
Tssr10946 1 9942537 to 9942550 13 - TSS region transcription start site region 10946
Tssr10947 1 9943590 to 9943608 18 - TSS region transcription start site region 10947
Cpgi29 1 9943688 to 9944485 797 CpG island CpG island 29
Tssr10948 1 9944087 to 9944090 3 - TSS region transcription start site region 10948
Tssr10949 1 9944104 to 9944127 23 - TSS region transcription start site region 10949