Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:95311595-100211609

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171 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi614 1 95313428 to 95314376 948 CpG island CpG island 614
Tssr8214 1 95313607 to 95313677 70 + TSS region transcription start site region 8214
Fam174a 1 95313628 to 95335284 21656 + protein coding gene family with sequence similarity 174, member A
Tssr8215 1 95313678 to 95313704 26 + TSS region transcription start site region 8215
Tssr13058 1 95314055 to 95314072 17 - TSS region transcription start site region 13058
Tssr8216 1 95314087 to 95314100 13 + TSS region transcription start site region 8216
Tssr8217 1 95314106 to 95314122 16 + TSS region transcription start site region 8217
Tssr8218 1 95314124 to 95314143 19 + TSS region transcription start site region 8218
Tssr8219 1 95314150 to 95314161 11 + TSS region transcription start site region 8219
BC055308 1 95328681 to 95331218 2537 + unclassified gene cDNA sequence BC055308
Tssr8220 1 95498581 to 95498607 26 + TSS region transcription start site region 8220
Gm15427 1 95498621 to 95499151 530 + pseudogene predicted pseudogene 15427
Tssr8221 1 95498772 to 95498800 28 + TSS region transcription start site region 8221
Tssr8222 1 95529023 to 95529032 9 + TSS region transcription start site region 8222
Rnu7-ps2 1 95565542 to 95565604 62 - pseudogene U7 small nuclear RNA, pseudogene 2
St8sia4 1 95587682 to 95667571 79889 - protein coding gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
Tssr13059 1 95626538 to 95626575 37 - TSS region transcription start site region 13059
Gm37642 1 95646774 to 95648508 1734 - unclassified gene predicted gene, 37642
Cpgi615 1 95667316 to 95668240 924 CpG island CpG island 615
Tssr13060 1 95667490 to 95667505 15 - TSS region transcription start site region 13060
Tssr13061 1 95667520 to 95667540 20 - TSS region transcription start site region 13061
Tssr13062 1 95667555 to 95667597 42 - TSS region transcription start site region 13062
Tssr8223 1 95667691 to 95667728 37 + TSS region transcription start site region 8223
Tssr8224 1 95667781 to 95667813 32 + TSS region transcription start site region 8224
Tssr8225 1 95667833 to 95667845 12 + TSS region transcription start site region 8225
Tssr8226 1 95668485 to 95668488 3 + TSS region transcription start site region 8226
Gm30431 1 95671599 to 95677382 5783 + lncRNA gene predicted gene, 30431
4930598F16Rik 1 95701184 to 95716518 15334 - lincRNA gene RIKEN cDNA 4930598F16 gene
Gm37761 1 95738196 to 95740293 2097 + unclassified gene predicted gene, 37761
Gm22360 1 95832129 to 95832235 106 - snRNA gene predicted gene, 22360
1700063A18Rik 1 95990659 to 96021758 31099 - lincRNA gene RIKEN cDNA 1700063A18 gene
Cpgi616 1 96264257 to 96264536 279 CpG island CpG island 616
Gm24586 1 96266853 to 96266941 88 - miRNA gene predicted gene, 24586
Gm22917 1 96303146 to 96303255 109 + miRNA gene predicted gene, 22917
Tssr167 1 96313241 to 96313242 1 + TSS region transcription start site region 167
Gm37076 1 96313242 to 96315535 2293 + unclassified gene predicted gene, 37076
Tssr168 1 96507107 to 96507111 4 + TSS region transcription start site region 168
Gm29601 1 96543281 to 96556729 13448 - lincRNA gene predicted gene 29601
Gm30490 1 96548341 to 96549996 1655 - lncRNA gene predicted gene, 30490
Tssr13063 1 96556718 to 96556728 10 - TSS region transcription start site region 13063
4930533P14Rik 1 96612057 to 96662573 50516 - lincRNA gene RIKEN cDNA 4930533P14 gene
D1Mit336 1 96615325 to 96615443 118 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 336
Gm26245 1 96617099 to 96617205 106 + snRNA gene predicted gene, 26245
Gm1833 1 96645420 to 96646170 750 + pseudogene predicted gene 1833
Gm26078 1 96762031 to 96762158 127 + snoRNA gene predicted gene, 26078
Slco4c1 1 96816270 to 96872171 55901 - protein coding gene solute carrier organic anion transporter family, member 4C1
Panct2 1 96871126 to 96881234 10108 + antisense lncRNA gene pluripotency-associated noncoding transcript 2
Cpgi617 1 96871864 to 96872505 641 CpG island CpG island 617
Tssr13064 1 96872107 to 96872147 40 - TSS region transcription start site region 13064
Tssr13065 1 96872165 to 96872179 14 - TSS region transcription start site region 13065
Tssr8227 1 96872225 to 96872253 28 + TSS region transcription start site region 8227
Tssr8228 1 96872259 to 96872297 38 + TSS region transcription start site region 8228
Slco6b1 1 96906176 to 96997560 91384 - pseudogene solute carrier organic anion transporter family, member 6b1
Wbcq4 1 96930958 to 96931066 108 QTL white blood cell QTL 4
D1Mit306 1 96930958 to 96931066 108 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 306
Nabq1 1 96930958 to 96931066 108 QTL nasal bone morphology QTL 1
Tssr13066 1 96997590 to 96997595 5 - TSS region transcription start site region 13066
Tssr13067 1 96997596 to 96997610 14 - TSS region transcription start site region 13067
Gm9499 1 97001820 to 97002783 963 - pseudogene predicted gene 9499
Tssr8229 1 97024398 to 97024416 18 + TSS region transcription start site region 8229
Gm28901 1 97024516 to 97025565 1049 - lincRNA gene predicted gene 28901
Gm6430 1 97024681 to 97025928 1247 + pseudogene predicted gene 6430
Slco6c1 1 97059447 to 97128339 68892 - protein coding gene solute carrier organic anion transporter family, member 6c1
D1Mit185 1 97066223 to 97066366 143 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 185
Tssr13068 1 97128249 to 97128256 7 - TSS region transcription start site region 13068
Tssr13069 1 97128268 to 97128291 23 - TSS region transcription start site region 13069
Tssr13070 1 97128292 to 97128313 21 - TSS region transcription start site region 13070
Tssr13071 1 97128323 to 97128328 5 - TSS region transcription start site region 13071
Gm7133 1 97162860 to 97310664 147804 + pseudogene predicted gene 7133
D1Mit337 1 97166202 to 97166411 209 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 337
Gm7135 1 97346182 to 97479109 132927 + pseudogene predicted gene 7135
Gm37171 1 97544264 to 97545448 1184 - unclassified gene predicted gene, 37171
Tssr8230 1 97563716 to 97563730 14 + TSS region transcription start site region 8230
A930009E08Rik 1 97637470 to 97642871 5401 - lncRNA gene RIKEN cDNA A930009E08 gene
D1Ertd622e 1 97643902 to 97662018 18116 - protein coding gene DNA segment, Chr 1, ERATO Doi 622, expressed
Tssr13072 1 97645513 to 97645522 9 - TSS region transcription start site region 13072
Cpgi618 1 97660493 to 97662540 2047 CpG island CpG island 618
Tssr13073 1 97661021 to 97661033 12 - TSS region transcription start site region 13073
Tssr13074 1 97661344 to 97661434 90 - TSS region transcription start site region 13074
Tssr13075 1 97661624 to 97661635 11 - TSS region transcription start site region 13075
Tssr13076 1 97661668 to 97661699 31 - TSS region transcription start site region 13076
Tssr13077 1 97661950 to 97662013 63 - TSS region transcription start site region 13077
Ppip5k2 1 97706043 to 97770406 64363 - protein coding gene diphosphoinositol pentakisphosphate kinase 2
Tssr13078 1 97706968 to 97706973 5 - TSS region transcription start site region 13078
Tssr13079 1 97721282 to 97721288 6 - TSS region transcription start site region 13079
Tssr13080 1 97761595 to 97761609 14 - TSS region transcription start site region 13080
Tssr13081 1 97761611 to 97761666 55 - TSS region transcription start site region 13081
Cpgi619 1 97769229 to 97770702 1473 CpG island CpG island 619
Tssr13082 1 97769405 to 97769423 18 - TSS region transcription start site region 13082
Tssr13083 1 97769876 to 97769907 31 - TSS region transcription start site region 13083
Tssr13084 1 97769980 to 97770066 86 - TSS region transcription start site region 13084
Tssr13085 1 97770068 to 97770099 31 - TSS region transcription start site region 13085
Tssr8231 1 97770158 to 97770209 51 + TSS region transcription start site region 8231
Gin1 1 97770172 to 97793709 23537 + protein coding gene gypsy retrotransposon integrase 1
Tssr8232 1 97770225 to 97770236 11 + TSS region transcription start site region 8232
Pam 1 97821091 to 98095658 274567 - protein coding gene peptidylglycine alpha-amidating monooxygenase
Tssr13086 1 97821441 to 97821446 5 - TSS region transcription start site region 13086
Tssr13087 1 97822998 to 97823015 17 - TSS region transcription start site region 13087
Gm37140 1 97878382 to 97880065 1683 - unclassified gene predicted gene, 37140
Tssr13088 1 97885652 to 97885662 10 - TSS region transcription start site region 13088
Tssr13089 1 97908615 to 97908619 4 - TSS region transcription start site region 13089
Tssr13090 1 97910722 to 97910744 22 - TSS region transcription start site region 13090
Tssr13091 1 97910745 to 97910775 30 - TSS region transcription start site region 13091
Gm31771 1 97911103 to 97924920 13817 + lncRNA gene predicted gene, 31771
Gm25413 1 97936400 to 97936711 311 + unclassified non-coding RNA gene predicted gene, 25413
Gm3531 1 97948901 to 97949389 488 - pseudogene predicted pseudogene 3531
Tssr13092 1 97949502 to 97949506 4 - TSS region transcription start site region 13092
Cpgi620 1 97976768 to 97977435 667 CpG island CpG island 620
Tssr13093 1 97976955 to 97976991 36 - TSS region transcription start site region 13093
Tssr13094 1 97977034 to 97977058 24 - TSS region transcription start site region 13094
Tssr13095 1 97977061 to 97977113 52 - TSS region transcription start site region 13095
Tssr13096 1 97977138 to 97977202 64 - TSS region transcription start site region 13096
Tssr13097 1 97977210 to 97977227 17 - TSS region transcription start site region 13097
Tssr13098 1 97977233 to 97977279 46 - TSS region transcription start site region 13098
Tssr13099 1 97977284 to 97977298 14 - TSS region transcription start site region 13099
Tssr13100 1 97977302 to 97977332 30 - TSS region transcription start site region 13100
Tssr13101 1 97977338 to 97977398 60 - TSS region transcription start site region 13101
B230216N24Rik 1 98031123 to 98047793 16670 - lncRNA gene RIKEN cDNA B230216N24 gene
Tssr13102 1 98047716 to 98047727 11 - TSS region transcription start site region 13102
Tssr13103 1 98047728 to 98047792 64 - TSS region transcription start site region 13103
Tssr13104 1 98047793 to 98047817 24 - TSS region transcription start site region 13104
Gm24465 1 98049822 to 98049928 106 + snRNA gene predicted gene, 24465
Tssr13105 1 98057701 to 98057712 11 - TSS region transcription start site region 13105
Tssr13106 1 98057716 to 98057732 16 - TSS region transcription start site region 13106
Tssr8233 1 98060307 to 98060309 2 + TSS region transcription start site region 8233
Cpgi621 1 98094813 to 98096319 1506 CpG island CpG island 621
Tssr13107 1 98095506 to 98095533 27 - TSS region transcription start site region 13107
Tssr13108 1 98095538 to 98095553 15 - TSS region transcription start site region 13108
Tssr13109 1 98095574 to 98095592 18 - TSS region transcription start site region 13109
Tssr13110 1 98095596 to 98095648 52 - TSS region transcription start site region 13110
Tssr8234 1 98131444 to 98131458 14 + TSS region transcription start site region 8234
1810006J02Rik 1 98131467 to 98144655 13188 + lincRNA gene RIKEN cDNA 1810006J02 gene
Tssr8235 1 98131470 to 98131499 29 + TSS region transcription start site region 8235
Gm29461 1 98173648 to 98190698 17050 + lincRNA gene predicted gene 29461
Gm7952 1 98263473 to 98264235 762 + pseudogene predicted gene 7952
Gm29462 1 98267151 to 98267438 287 + pseudogene predicted gene 29462
Gm46078 1 98289553 to 98292969 3416 + pseudogene predicted gene, 46078
Tssr169 1 98349893 to 98349894 1 + TSS region transcription start site region 169
Tssr8236 1 98421092 to 98421134 42 + TSS region transcription start site region 8236
Slco6d1 1 98421124 to 98516991 95867 + protein coding gene solute carrier organic anion transporter family, member 6d1
Tssr8237 1 98457715 to 98457748 33 + TSS region transcription start site region 8237
Gm3555 1 98457768 to 98459162 1394 + pseudogene predicted pseudogene 3555
D1Mit11 1 98547060 to 98547159 99 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 11
Gm26134 1 98549451 to 98549560 109 + miRNA gene predicted gene, 26134
Gm7967 1 98589517 to 98607384 17867 + lincRNA gene predicted gene 7967
Tssr8238 1 98693476 to 98693495 19 + TSS region transcription start site region 8238
Gm29460 1 98764841 to 98765554 713 + pseudogene predicted gene 29460
Gm23434 1 99017364 to 99017463 99 + snRNA gene predicted gene, 23434
D1Mit157 1 99614988 to 99615136 148 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 157
Gm18248 1 99638396 to 99640241 1845 - pseudogene predicted gene, 18248
Tssr13111 1 99650442 to 99650444 2 - TSS region transcription start site region 13111
D1Mit257 1 99749097 to 99749230 133 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 257
Tssr8239 1 99772394 to 99772408 14 + TSS region transcription start site region 8239
Tssr8240 1 99772429 to 99772438 9 + TSS region transcription start site region 8240
Tssr8241 1 99790200 to 99790203 3 + TSS region transcription start site region 8241
Prdx2-ps1 1 99790429 to 99791025 596 - pseudogene peroxiredoxin 2, pseudogene 1
Tssr13112 1 99791090 to 99791102 12 - TSS region transcription start site region 13112
Tssr13113 1 99791821 to 99791843 22 - TSS region transcription start site region 13113
Gm37877 1 99847984 to 99850692 2708 + unclassified gene predicted gene, 37877
Aath7 1 99904910 to 99904910 0 QTL aortic arch atherosclerosis 7
Alpq5 1 99904910 to 99904910 0 QTL alcohol preference QTL 5
D1Mit85 1 99936667 to 99936802 135 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 85
D1Mit385 1 99965618 to 99965737 119 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 385
Gm19029 1 100006021 to 100006584 563 + pseudogene predicted gene, 19029
Tssr8242 1 100042783 to 100042784 1 + TSS region transcription start site region 8242
Tssr13114 1 100180147 to 100180185 38 - TSS region transcription start site region 13114
Tssr13115 1 100180207 to 100180245 38 - TSS region transcription start site region 13115
Tssr13116 1 100180262 to 100180308 46 - TSS region transcription start site region 13116
Tssr13117 1 100180377 to 100180388 11 - TSS region transcription start site region 13117
Cntnap5b 1 100485942 to 99772765 -713177 + protein coding gene contactin associated protein-like 5B
Leusq5 1 126458780 to 98547060 -27911720 QTL leucocytosis susceptibility QTL 5