Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:94058485-97278488

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr8211 1 94075168 to 94075173 5 + TSS region transcription start site region 8211
Tssr8212 1 94075188 to 94075196 8 + TSS region transcription start site region 8212
Tssr8213 1 94077023 to 94077027 4 + TSS region transcription start site region 8213
Gm7891 1 94204417 to 94205259 842 + pseudogene predicted gene 7891
Gm7895 1 94468715 to 94469887 1172 - pseudogene predicted gene 7895
D1Mit489 1 94513548 to 94513657 109 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 489
Gm23389 1 94615636 to 94615704 68 - snoRNA gene predicted gene, 23389
4930440C22Rik 1 94797442 to 94802472 5030 + lincRNA gene RIKEN cDNA 4930440C22 gene
Gm23181 1 95039934 to 95040043 109 - snoRNA gene predicted gene, 23181
D1Ertd399e 1 95201677 to 95201926 249 DNA segment DNA segment, Chr 1, ERATO Doi 399, expressed
Gm5264 1 95255963 to 95256810 847 - pseudogene predicted gene 5264
Cpgi614 1 95313428 to 95314376 948 CpG island CpG island 614
Tssr8214 1 95313607 to 95313677 70 + TSS region transcription start site region 8214
Fam174a 1 95313628 to 95335284 21656 + protein coding gene family with sequence similarity 174, member A
Tssr8215 1 95313678 to 95313704 26 + TSS region transcription start site region 8215
Tssr13058 1 95314055 to 95314072 17 - TSS region transcription start site region 13058
Tssr8216 1 95314087 to 95314100 13 + TSS region transcription start site region 8216
Tssr8217 1 95314106 to 95314122 16 + TSS region transcription start site region 8217
Tssr8218 1 95314124 to 95314143 19 + TSS region transcription start site region 8218
Tssr8219 1 95314150 to 95314161 11 + TSS region transcription start site region 8219
BC055308 1 95328681 to 95331218 2537 + unclassified gene cDNA sequence BC055308
Tssr8220 1 95498581 to 95498607 26 + TSS region transcription start site region 8220
Gm15427 1 95498621 to 95499151 530 + pseudogene predicted pseudogene 15427
Tssr8221 1 95498772 to 95498800 28 + TSS region transcription start site region 8221
Tssr8222 1 95529023 to 95529032 9 + TSS region transcription start site region 8222
Rnu7-ps2 1 95565542 to 95565604 62 - pseudogene U7 small nuclear RNA, pseudogene 2
St8sia4 1 95587682 to 95667571 79889 - protein coding gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
Tssr13059 1 95626538 to 95626575 37 - TSS region transcription start site region 13059
Gm37642 1 95646774 to 95648508 1734 - unclassified gene predicted gene, 37642
Cpgi615 1 95667316 to 95668240 924 CpG island CpG island 615
Tssr13060 1 95667490 to 95667505 15 - TSS region transcription start site region 13060
Tssr13061 1 95667520 to 95667540 20 - TSS region transcription start site region 13061
Tssr13062 1 95667555 to 95667597 42 - TSS region transcription start site region 13062
Tssr8223 1 95667691 to 95667728 37 + TSS region transcription start site region 8223
Tssr8224 1 95667781 to 95667813 32 + TSS region transcription start site region 8224
Tssr8225 1 95667833 to 95667845 12 + TSS region transcription start site region 8225
Tssr8226 1 95668485 to 95668488 3 + TSS region transcription start site region 8226
Gm30431 1 95671599 to 95677382 5783 + lncRNA gene predicted gene, 30431
4930598F16Rik 1 95701184 to 95716518 15334 - lincRNA gene RIKEN cDNA 4930598F16 gene
Gm37761 1 95738196 to 95740293 2097 + unclassified gene predicted gene, 37761
Gm22360 1 95832129 to 95832235 106 - snRNA gene predicted gene, 22360
1700063A18Rik 1 95990659 to 96021758 31099 - lincRNA gene RIKEN cDNA 1700063A18 gene
Cpgi616 1 96264257 to 96264536 279 CpG island CpG island 616
Gm24586 1 96266853 to 96266941 88 - miRNA gene predicted gene, 24586
Gm22917 1 96303146 to 96303255 109 + miRNA gene predicted gene, 22917
Tssr167 1 96313241 to 96313242 1 + TSS region transcription start site region 167
Gm37076 1 96313242 to 96315535 2293 + unclassified gene predicted gene, 37076
Tssr168 1 96507107 to 96507111 4 + TSS region transcription start site region 168
Gm29601 1 96543281 to 96556729 13448 - lincRNA gene predicted gene 29601
Gm30490 1 96548341 to 96549996 1655 - lncRNA gene predicted gene, 30490
Tssr13063 1 96556718 to 96556728 10 - TSS region transcription start site region 13063
4930533P14Rik 1 96612057 to 96662573 50516 - lincRNA gene RIKEN cDNA 4930533P14 gene
D1Mit336 1 96615325 to 96615443 118 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 336
Gm26245 1 96617099 to 96617205 106 + snRNA gene predicted gene, 26245
Gm1833 1 96645420 to 96646170 750 + pseudogene predicted gene 1833
Gm26078 1 96762031 to 96762158 127 + snoRNA gene predicted gene, 26078
Slco4c1 1 96816270 to 96872171 55901 - protein coding gene solute carrier organic anion transporter family, member 4C1
Panct2 1 96871126 to 96881234 10108 + antisense lncRNA gene pluripotency-associated noncoding transcript 2
Cpgi617 1 96871864 to 96872505 641 CpG island CpG island 617
Tssr13064 1 96872107 to 96872147 40 - TSS region transcription start site region 13064
Tssr13065 1 96872165 to 96872179 14 - TSS region transcription start site region 13065
Tssr8227 1 96872225 to 96872253 28 + TSS region transcription start site region 8227
Tssr8228 1 96872259 to 96872297 38 + TSS region transcription start site region 8228
Slco6b1 1 96906176 to 96997560 91384 - pseudogene solute carrier organic anion transporter family, member 6b1
Nabq1 1 96930958 to 96931066 108 QTL nasal bone morphology QTL 1
Wbcq4 1 96930958 to 96931066 108 QTL white blood cell QTL 4
D1Mit306 1 96930958 to 96931066 108 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 306
Tssr13066 1 96997590 to 96997595 5 - TSS region transcription start site region 13066
Tssr13067 1 96997596 to 96997610 14 - TSS region transcription start site region 13067
Gm9499 1 97001820 to 97002783 963 - pseudogene predicted gene 9499
Tssr8229 1 97024398 to 97024416 18 + TSS region transcription start site region 8229
Gm28901 1 97024516 to 97025565 1049 - lincRNA gene predicted gene 28901
Gm6430 1 97024681 to 97025928 1247 + pseudogene predicted gene 6430
Slco6c1 1 97059447 to 97128339 68892 - protein coding gene solute carrier organic anion transporter family, member 6c1
D1Mit185 1 97066223 to 97066366 143 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 185
Tssr13068 1 97128249 to 97128256 7 - TSS region transcription start site region 13068
Tssr13069 1 97128268 to 97128291 23 - TSS region transcription start site region 13069
Tssr13070 1 97128292 to 97128313 21 - TSS region transcription start site region 13070
Tssr13071 1 97128323 to 97128328 5 - TSS region transcription start site region 13071
Gm7133 1 97162860 to 97310664 147804 + pseudogene predicted gene 7133
D1Mit337 1 97166202 to 97166411 209 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 337