Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:93480193-93791509

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sept2 1 93478968 to 93509733 30765 + protein coding gene septin 2
Tssr8180 1 93482594 to 93482600 6 + TSS region transcription start site region 8180
Tssr165 1 93489932 to 93489934 2 + TSS region transcription start site region 165
Tssr8181 1 93501568 to 93501581 13 + TSS region transcription start site region 8181
Tssr8182 1 93507880 to 93507895 15 + TSS region transcription start site region 8182
Tssr8183 1 93509125 to 93509157 32 + TSS region transcription start site region 8183
Tssr8184 1 93509162 to 93509179 17 + TSS region transcription start site region 8184
Cpgi603 1 93511526 to 93512695 1169 CpG island CpG island 603
Tssr166 1 93511913 to 93511920 7 - TSS region transcription start site region 166
Tssr8185 1 93512088 to 93512125 37 + TSS region transcription start site region 8185
Farp2 1 93512104 to 93621976 109872 + protein coding gene FERM, RhoGEF and pleckstrin domain protein 2
Tssr8186 1 93512128 to 93512156 28 + TSS region transcription start site region 8186
Gm37250 1 93531815 to 93534202 2387 + unclassified gene predicted gene, 37250
D1Mit534 1 93544151 to 93544281 130 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 534
Gm41920 1 93550299 to 93554685 4386 + lncRNA gene predicted gene, 41920
Gm18874 1 93585460 to 93586000 540 - pseudogene predicted gene, 18874
D1Mit60 1 93609133 to 93609275 142 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 60
Stk25 1 93620751 to 93654216 33465 - protein coding gene serine/threonine kinase 25 (yeast)
Tssr13034 1 93621996 to 93622000 4 - TSS region transcription start site region 13034
Cpgi604 1 93634905 to 93636204 1299 CpG island CpG island 604
Tssr13035 1 93635107 to 93635117 10 - TSS region transcription start site region 13035
Tssr13036 1 93635137 to 93635188 51 - TSS region transcription start site region 13036
Tssr8187 1 93635169 to 93635210 41 + TSS region transcription start site region 8187
Gm28536 1 93635193 to 93636509 1316 + antisense lncRNA gene predicted gene 28536
Tssr13037 1 93635621 to 93635632 11 - TSS region transcription start site region 13037
Tssr13038 1 93635641 to 93635652 11 - TSS region transcription start site region 13038
Tssr13039 1 93635659 to 93635674 15 - TSS region transcription start site region 13039
Tssr13040 1 93635692 to 93635711 19 - TSS region transcription start site region 13040
Tssr13041 1 93635750 to 93635761 11 - TSS region transcription start site region 13041
Tssr13042 1 93654144 to 93654155 11 - TSS region transcription start site region 13042
Tssr13043 1 93654198 to 93654212 14 - TSS region transcription start site region 13043
Cpgi605 1 93668883 to 93669112 229 CpG island CpG island 605
Cpgi606 1 93685409 to 93686934 1525 CpG island CpG island 606
Tssr8188 1 93685468 to 93685484 16 + TSS region transcription start site region 8188
Tssr8189 1 93685574 to 93685678 104 + TSS region transcription start site region 8189
Bok 1 93685660 to 93695764 10104 + protein coding gene BCL2-related ovarian killer
Tssr8190 1 93685683 to 93685709 26 + TSS region transcription start site region 8190
Tssr8191 1 93685738 to 93685807 69 + TSS region transcription start site region 8191
Tssr8192 1 93685906 to 93685929 23 + TSS region transcription start site region 8192
Tssr8193 1 93693720 to 93693735 15 + TSS region transcription start site region 8193
Thap4 1 93705391 to 93754838 49447 - protein coding gene THAP domain containing 4
Tssr8194 1 93719653 to 93719657 4 + TSS region transcription start site region 8194
Gm10550 1 93731104 to 93751072 19968 + antisense lncRNA gene predicted gene 10550
Tssr13044 1 93731899 to 93731929 30 - TSS region transcription start site region 13044
Tssr13045 1 93731931 to 93731944 13 - TSS region transcription start site region 13045
Tssr13046 1 93731961 to 93731972 11 - TSS region transcription start site region 13046
Cpgi607 1 93753793 to 93755493 1700 CpG island CpG island 607
Tssr13047 1 93754561 to 93754678 117 - TSS region transcription start site region 13047
Tssr13048 1 93754690 to 93754707 17 - TSS region transcription start site region 13048
Tssr13049 1 93754769 to 93754806 37 - TSS region transcription start site region 13049
Tssr13050 1 93754811 to 93754857 46 - TSS region transcription start site region 13050
Tssr8195 1 93754899 to 93754932 33 + TSS region transcription start site region 8195
Tssr8196 1 93754933 to 93754946 13 + TSS region transcription start site region 8196
Tssr8197 1 93754952 to 93755029 77 + TSS region transcription start site region 8197
Atg4b 1 93755033 to 93789529 34496 + protein coding gene autophagy related 4B, cysteine peptidase
Tssr8198 1 93755148 to 93755168 20 + TSS region transcription start site region 8198
Tssr8199 1 93755174 to 93755193 19 + TSS region transcription start site region 8199
Tir6 1 120601949 to 93609133 -26992816 QTL trypanosome infection response 6