Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:93436815-93629202

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hdlbp 1 93405940 to 93478815 72875 - protein coding gene high density lipoprotein (HDL) binding protein
Tssr13028 1 93441862 to 93441863 1 - TSS region transcription start site region 13028
Cpgi601 1 93444846 to 93446020 1174 CpG island CpG island 601
Tssr13029 1 93445422 to 93445436 14 - TSS region transcription start site region 13029
Tssr13030 1 93445642 to 93445660 18 - TSS region transcription start site region 13030
Tssr164 1 93445803 to 93445808 5 + TSS region transcription start site region 164
Cpgi602 1 93478098 to 93479695 1597 CpG island CpG island 602
Tssr13031 1 93478329 to 93478391 62 - TSS region transcription start site region 13031
Tssr8175 1 93478508 to 93478533 25 + TSS region transcription start site region 8175
Tssr13032 1 93478785 to 93478823 38 - TSS region transcription start site region 13032
Tssr13033 1 93478862 to 93478868 6 - TSS region transcription start site region 13033
Sept2 1 93478968 to 93509733 30765 + protein coding gene septin 2
Tssr8176 1 93478981 to 93479054 73 + TSS region transcription start site region 8176
Tssr8177 1 93479068 to 93479073 5 + TSS region transcription start site region 8177
Tssr8178 1 93479087 to 93479098 11 + TSS region transcription start site region 8178
Tssr8179 1 93479198 to 93479234 36 + TSS region transcription start site region 8179
Tssr8180 1 93482594 to 93482600 6 + TSS region transcription start site region 8180
Tssr165 1 93489932 to 93489934 2 + TSS region transcription start site region 165
Tssr8181 1 93501568 to 93501581 13 + TSS region transcription start site region 8181
Tssr8182 1 93507880 to 93507895 15 + TSS region transcription start site region 8182
Tssr8183 1 93509125 to 93509157 32 + TSS region transcription start site region 8183
Tssr8184 1 93509162 to 93509179 17 + TSS region transcription start site region 8184
Cpgi603 1 93511526 to 93512695 1169 CpG island CpG island 603
Tssr166 1 93511913 to 93511920 7 - TSS region transcription start site region 166
Tssr8185 1 93512088 to 93512125 37 + TSS region transcription start site region 8185
Farp2 1 93512104 to 93621976 109872 + protein coding gene FERM, RhoGEF and pleckstrin domain protein 2
Tssr8186 1 93512128 to 93512156 28 + TSS region transcription start site region 8186
Gm37250 1 93531815 to 93534202 2387 + unclassified gene predicted gene, 37250
D1Mit534 1 93544151 to 93544281 130 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 534
Gm41920 1 93550299 to 93554685 4386 + lncRNA gene predicted gene, 41920
Gm18874 1 93585460 to 93586000 540 - pseudogene predicted gene, 18874
D1Mit60 1 93609133 to 93609275 142 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 60
Stk25 1 93620751 to 93654216 33465 - protein coding gene serine/threonine kinase 25 (yeast)
Tssr13034 1 93621996 to 93622000 4 - TSS region transcription start site region 13034
Tir6 1 120601949 to 93609133 -26992816 QTL trypanosome infection response 6