Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:93343678-97283704

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213 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi598 1 93342489 to 93344200 1711 CpG island CpG island 598
Ppp1r7 1 93343645 to 93367622 23977 + protein coding gene protein phosphatase 1, regulatory subunit 7
Tssr163 1 93343682 to 93343691 9 + TSS region transcription start site region 163
Mir6902 1 93346092 to 93346155 63 + miRNA gene microRNA 6902
Mir6345 1 93352158 to 93352285 127 + miRNA gene microRNA 6345
Gm26446 1 93363255 to 93363357 102 + snRNA gene predicted gene, 26446
Tssr8170 1 93373796 to 93373807 11 + TSS region transcription start site region 8170
Tssr8171 1 93373810 to 93373839 29 + TSS region transcription start site region 8171
Tssr8172 1 93373844 to 93373860 16 + TSS region transcription start site region 8172
Tssr8173 1 93373864 to 93373871 7 + TSS region transcription start site region 8173
Tssr8174 1 93373874 to 93373899 25 + TSS region transcription start site region 8174
Ano7 1 93373930 to 93404303 30373 + protein coding gene anoctamin 7
Cpgi599 1 93394349 to 93394675 326 CpG island CpG island 599
Cpgi600 1 93401244 to 93401974 730 CpG island CpG island 600
Hdlbp 1 93405940 to 93478815 72875 - protein coding gene high density lipoprotein (HDL) binding protein
Gm17415 1 93421700 to 93422488 788 + pseudogene predicted gene, 17415
Tssr13023 1 93425286 to 93425317 31 - TSS region transcription start site region 13023
Tssr13024 1 93425363 to 93425388 25 - TSS region transcription start site region 13024
Tssr13025 1 93428217 to 93428233 16 - TSS region transcription start site region 13025
Tssr13026 1 93429400 to 93429418 18 - TSS region transcription start site region 13026
Tssr13027 1 93429477 to 93429489 12 - TSS region transcription start site region 13027
Tssr13028 1 93441862 to 93441863 1 - TSS region transcription start site region 13028
Cpgi601 1 93444846 to 93446020 1174 CpG island CpG island 601
Tssr13029 1 93445422 to 93445436 14 - TSS region transcription start site region 13029
Tssr13030 1 93445642 to 93445660 18 - TSS region transcription start site region 13030
Tssr164 1 93445803 to 93445808 5 + TSS region transcription start site region 164
Cpgi602 1 93478098 to 93479695 1597 CpG island CpG island 602
Tssr13031 1 93478329 to 93478391 62 - TSS region transcription start site region 13031
Tssr8175 1 93478508 to 93478533 25 + TSS region transcription start site region 8175
Tssr13032 1 93478785 to 93478823 38 - TSS region transcription start site region 13032
Tssr13033 1 93478862 to 93478868 6 - TSS region transcription start site region 13033
Sept2 1 93478968 to 93509733 30765 + protein coding gene septin 2
Tssr8176 1 93478981 to 93479054 73 + TSS region transcription start site region 8176
Tssr8177 1 93479068 to 93479073 5 + TSS region transcription start site region 8177
Tssr8178 1 93479087 to 93479098 11 + TSS region transcription start site region 8178
Tssr8179 1 93479198 to 93479234 36 + TSS region transcription start site region 8179
Tssr8180 1 93482594 to 93482600 6 + TSS region transcription start site region 8180
Tssr165 1 93489932 to 93489934 2 + TSS region transcription start site region 165
Tssr8181 1 93501568 to 93501581 13 + TSS region transcription start site region 8181
Tssr8182 1 93507880 to 93507895 15 + TSS region transcription start site region 8182
Tssr8183 1 93509125 to 93509157 32 + TSS region transcription start site region 8183
Tssr8184 1 93509162 to 93509179 17 + TSS region transcription start site region 8184
Cpgi603 1 93511526 to 93512695 1169 CpG island CpG island 603
Tssr166 1 93511913 to 93511920 7 - TSS region transcription start site region 166
Tssr8185 1 93512088 to 93512125 37 + TSS region transcription start site region 8185
Farp2 1 93512104 to 93621976 109872 + protein coding gene FERM, RhoGEF and pleckstrin domain protein 2
Tssr8186 1 93512128 to 93512156 28 + TSS region transcription start site region 8186
Gm37250 1 93531815 to 93534202 2387 + unclassified gene predicted gene, 37250
D1Mit534 1 93544151 to 93544281 130 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 534
Gm41920 1 93550299 to 93554685 4386 + lncRNA gene predicted gene, 41920
Gm18874 1 93585460 to 93586000 540 - pseudogene predicted gene, 18874
D1Mit60 1 93609133 to 93609275 142 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 60
Stk25 1 93620751 to 93654216 33465 - protein coding gene serine/threonine kinase 25 (yeast)
Tssr13034 1 93621996 to 93622000 4 - TSS region transcription start site region 13034
Cpgi604 1 93634905 to 93636204 1299 CpG island CpG island 604
Tssr13035 1 93635107 to 93635117 10 - TSS region transcription start site region 13035
Tssr13036 1 93635137 to 93635188 51 - TSS region transcription start site region 13036
Tssr8187 1 93635169 to 93635210 41 + TSS region transcription start site region 8187
Gm28536 1 93635193 to 93636509 1316 + antisense lncRNA gene predicted gene 28536
Tssr13037 1 93635621 to 93635632 11 - TSS region transcription start site region 13037
Tssr13038 1 93635641 to 93635652 11 - TSS region transcription start site region 13038
Tssr13039 1 93635659 to 93635674 15 - TSS region transcription start site region 13039
Tssr13040 1 93635692 to 93635711 19 - TSS region transcription start site region 13040
Tssr13041 1 93635750 to 93635761 11 - TSS region transcription start site region 13041
Tssr13042 1 93654144 to 93654155 11 - TSS region transcription start site region 13042
Tssr13043 1 93654198 to 93654212 14 - TSS region transcription start site region 13043
Cpgi605 1 93668883 to 93669112 229 CpG island CpG island 605
Cpgi606 1 93685409 to 93686934 1525 CpG island CpG island 606
Tssr8188 1 93685468 to 93685484 16 + TSS region transcription start site region 8188
Tssr8189 1 93685574 to 93685678 104 + TSS region transcription start site region 8189
Bok 1 93685660 to 93695764 10104 + protein coding gene BCL2-related ovarian killer
Tssr8190 1 93685683 to 93685709 26 + TSS region transcription start site region 8190
Tssr8191 1 93685738 to 93685807 69 + TSS region transcription start site region 8191
Tssr8192 1 93685906 to 93685929 23 + TSS region transcription start site region 8192
Tssr8193 1 93693720 to 93693735 15 + TSS region transcription start site region 8193
Thap4 1 93705391 to 93754838 49447 - protein coding gene THAP domain containing 4
Tssr8194 1 93719653 to 93719657 4 + TSS region transcription start site region 8194
Gm10550 1 93731104 to 93751072 19968 + antisense lncRNA gene predicted gene 10550
Tssr13044 1 93731899 to 93731929 30 - TSS region transcription start site region 13044
Tssr13045 1 93731931 to 93731944 13 - TSS region transcription start site region 13045
Tssr13046 1 93731961 to 93731972 11 - TSS region transcription start site region 13046
Cpgi607 1 93753793 to 93755493 1700 CpG island CpG island 607
Tssr13047 1 93754561 to 93754678 117 - TSS region transcription start site region 13047
Tssr13048 1 93754690 to 93754707 17 - TSS region transcription start site region 13048
Tssr13049 1 93754769 to 93754806 37 - TSS region transcription start site region 13049
Tssr13050 1 93754811 to 93754857 46 - TSS region transcription start site region 13050
Tssr8195 1 93754899 to 93754932 33 + TSS region transcription start site region 8195
Tssr8196 1 93754933 to 93754946 13 + TSS region transcription start site region 8196
Tssr8197 1 93754952 to 93755029 77 + TSS region transcription start site region 8197
Atg4b 1 93755033 to 93789529 34496 + protein coding gene autophagy related 4B, cysteine peptidase
Tssr8198 1 93755148 to 93755168 20 + TSS region transcription start site region 8198
Tssr8199 1 93755174 to 93755193 19 + TSS region transcription start site region 8199
Dtymk 1 93792576 to 93801934 9358 - protein coding gene deoxythymidylate kinase
D1Ertd203 1 93792676 to 93792922 246 DNA segment DNA segment, Chr 1, ERATO Doi 203
Tssr13051 1 93799358 to 93799370 12 - TSS region transcription start site region 13051
Cpgi608 1 93801605 to 93802292 687 CpG island CpG island 608
Tssr13052 1 93801840 to 93801945 105 - TSS region transcription start site region 13052
Tssr8200 1 93802151 to 93802167 16 + TSS region transcription start site region 8200
Cpgi609 1 93803435 to 93804718 1283 CpG island CpG island 609
Tssr13053 1 93803770 to 93803817 47 - TSS region transcription start site region 13053
Tssr8201 1 93803945 to 93803998 53 + TSS region transcription start site region 8201
Ing5 1 93803965 to 93822101 18136 + protein coding gene inhibitor of growth family, member 5
Gm22089 1 93808570 to 93808671 101 - snRNA gene predicted gene, 22089
Tssr8202 1 93811809 to 93811846 37 + TSS region transcription start site region 8202
Cpgi610 1 93824876 to 93825683 807 CpG island CpG island 610
D2hgdh 1 93824909 to 93852348 27439 + protein coding gene D-2-hydroxyglutarate dehydrogenase
Tssr8203 1 93825230 to 93825251 21 + TSS region transcription start site region 8203
Tssr8204 1 93825270 to 93825305 35 + TSS region transcription start site region 8204
Tssr13054 1 93825463 to 93825490 27 - TSS region transcription start site region 13054
Tssr8205 1 93825612 to 93825632 20 + TSS region transcription start site region 8205
Cpgi611 1 93826370 to 93826659 289 CpG island CpG island 611
Tssr8206 1 93831166 to 93831170 4 + TSS region transcription start site region 8206
Tssr8207 1 93859846 to 93859866 20 + TSS region transcription start site region 8207
Gal3st2 1 93861344 to 93876494 15150 + protein coding gene galactose-3-O-sulfotransferase 2
Gm30204 1 93890091 to 93898973 8882 + lncRNA gene predicted gene, 30204
Gm18666 1 93906809 to 93916968 10159 + pseudogene predicted gene, 18666
Gal3st2b 1 93918437 to 93942645 24208 + protein coding gene galactose-3-O-sulfotransferase 2B
Gm7889 1 93975353 to 93985816 10463 + pseudogene predicted gene 7889
Gal3st2c 1 93990509 to 94011539 21030 + protein coding gene galactose-3-O-sulfotransferase 2C
Tssr8208 1 93996256 to 93996280 24 + TSS region transcription start site region 8208
9130414P19Rik 1 94015049 to 94017146 2097 unclassified gene RIKEN cDNA 9130414P19 gene
Tssr8209 1 94016908 to 94016912 4 + TSS region transcription start site region 8209
Tssr8210 1 94020459 to 94020485 26 + TSS region transcription start site region 8210
Neu4 1 94020493 to 94028334 7841 + protein coding gene sialidase 4
Cpgi612 1 94022436 to 94022960 524 CpG island CpG island 612
Cpgi613 1 94035275 to 94035488 213 CpG island CpG island 613
Tssr13055 1 94035483 to 94035491 8 - TSS region transcription start site region 13055
Pdcd1 1 94038305 to 94052553 14248 - protein coding gene programmed cell death 1
Tssr13056 1 94052557 to 94052573 16 - TSS region transcription start site region 13056
Tssr13057 1 94052577 to 94052587 10 - TSS region transcription start site region 13057
Tssr8211 1 94075168 to 94075173 5 + TSS region transcription start site region 8211
Tssr8212 1 94075188 to 94075196 8 + TSS region transcription start site region 8212
Tssr8213 1 94077023 to 94077027 4 + TSS region transcription start site region 8213
Gm7891 1 94204417 to 94205259 842 + pseudogene predicted gene 7891
Gm7895 1 94468715 to 94469887 1172 - pseudogene predicted gene 7895
D1Mit489 1 94513548 to 94513657 109 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 489
Gm23389 1 94615636 to 94615704 68 - snoRNA gene predicted gene, 23389
4930440C22Rik 1 94797442 to 94802472 5030 + lincRNA gene RIKEN cDNA 4930440C22 gene
Gm23181 1 95039934 to 95040043 109 - snoRNA gene predicted gene, 23181
D1Ertd399e 1 95201677 to 95201926 249 DNA segment DNA segment, Chr 1, ERATO Doi 399, expressed
Gm5264 1 95255963 to 95256810 847 - pseudogene predicted gene 5264
Cpgi614 1 95313428 to 95314376 948 CpG island CpG island 614
Tssr8214 1 95313607 to 95313677 70 + TSS region transcription start site region 8214
Fam174a 1 95313628 to 95335284 21656 + protein coding gene family with sequence similarity 174, member A
Tssr8215 1 95313678 to 95313704 26 + TSS region transcription start site region 8215
Tssr13058 1 95314055 to 95314072 17 - TSS region transcription start site region 13058
Tssr8216 1 95314087 to 95314100 13 + TSS region transcription start site region 8216
Tssr8217 1 95314106 to 95314122 16 + TSS region transcription start site region 8217
Tssr8218 1 95314124 to 95314143 19 + TSS region transcription start site region 8218
Tssr8219 1 95314150 to 95314161 11 + TSS region transcription start site region 8219
BC055308 1 95328681 to 95331218 2537 + unclassified gene cDNA sequence BC055308
Tssr8220 1 95498581 to 95498607 26 + TSS region transcription start site region 8220
Gm15427 1 95498621 to 95499151 530 + pseudogene predicted pseudogene 15427
Tssr8221 1 95498772 to 95498800 28 + TSS region transcription start site region 8221
Tssr8222 1 95529023 to 95529032 9 + TSS region transcription start site region 8222
Rnu7-ps2 1 95565542 to 95565604 62 - pseudogene U7 small nuclear RNA, pseudogene 2
St8sia4 1 95587682 to 95667571 79889 - protein coding gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
Tssr13059 1 95626538 to 95626575 37 - TSS region transcription start site region 13059
Gm37642 1 95646774 to 95648508 1734 - unclassified gene predicted gene, 37642
Cpgi615 1 95667316 to 95668240 924 CpG island CpG island 615
Tssr13060 1 95667490 to 95667505 15 - TSS region transcription start site region 13060
Tssr13061 1 95667520 to 95667540 20 - TSS region transcription start site region 13061
Tssr13062 1 95667555 to 95667597 42 - TSS region transcription start site region 13062
Tssr8223 1 95667691 to 95667728 37 + TSS region transcription start site region 8223
Tssr8224 1 95667781 to 95667813 32 + TSS region transcription start site region 8224
Tssr8225 1 95667833 to 95667845 12 + TSS region transcription start site region 8225
Tssr8226 1 95668485 to 95668488 3 + TSS region transcription start site region 8226
Gm30431 1 95671599 to 95677382 5783 + lncRNA gene predicted gene, 30431
4930598F16Rik 1 95701184 to 95716518 15334 - lincRNA gene RIKEN cDNA 4930598F16 gene
Gm37761 1 95738196 to 95740293 2097 + unclassified gene predicted gene, 37761
Gm22360 1 95832129 to 95832235 106 - snRNA gene predicted gene, 22360
1700063A18Rik 1 95990659 to 96021758 31099 - lincRNA gene RIKEN cDNA 1700063A18 gene
Cpgi616 1 96264257 to 96264536 279 CpG island CpG island 616
Gm24586 1 96266853 to 96266941 88 - miRNA gene predicted gene, 24586
Gm22917 1 96303146 to 96303255 109 + miRNA gene predicted gene, 22917
Tssr167 1 96313241 to 96313242 1 + TSS region transcription start site region 167
Gm37076 1 96313242 to 96315535 2293 + unclassified gene predicted gene, 37076
Tssr168 1 96507107 to 96507111 4 + TSS region transcription start site region 168
Gm29601 1 96543281 to 96556729 13448 - lincRNA gene predicted gene 29601
Gm30490 1 96548341 to 96549996 1655 - lncRNA gene predicted gene, 30490
Tssr13063 1 96556718 to 96556728 10 - TSS region transcription start site region 13063
4930533P14Rik 1 96612057 to 96662573 50516 - lincRNA gene RIKEN cDNA 4930533P14 gene
D1Mit336 1 96615325 to 96615443 118 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 336
Gm26245 1 96617099 to 96617205 106 + snRNA gene predicted gene, 26245
Gm1833 1 96645420 to 96646170 750 + pseudogene predicted gene 1833
Gm26078 1 96762031 to 96762158 127 + snoRNA gene predicted gene, 26078
Slco4c1 1 96816270 to 96872171 55901 - protein coding gene solute carrier organic anion transporter family, member 4C1
Panct2 1 96871126 to 96881234 10108 + antisense lncRNA gene pluripotency-associated noncoding transcript 2
Cpgi617 1 96871864 to 96872505 641 CpG island CpG island 617
Tssr13064 1 96872107 to 96872147 40 - TSS region transcription start site region 13064
Tssr13065 1 96872165 to 96872179 14 - TSS region transcription start site region 13065
Tssr8227 1 96872225 to 96872253 28 + TSS region transcription start site region 8227
Tssr8228 1 96872259 to 96872297 38 + TSS region transcription start site region 8228
Slco6b1 1 96906176 to 96997560 91384 - pseudogene solute carrier organic anion transporter family, member 6b1
Wbcq4 1 96930958 to 96931066 108 QTL white blood cell QTL 4
Nabq1 1 96930958 to 96931066 108 QTL nasal bone morphology QTL 1
D1Mit306 1 96930958 to 96931066 108 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 306
Tssr13066 1 96997590 to 96997595 5 - TSS region transcription start site region 13066
Tssr13067 1 96997596 to 96997610 14 - TSS region transcription start site region 13067
Gm9499 1 97001820 to 97002783 963 - pseudogene predicted gene 9499