Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:93254909-94422348

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156 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sned1 1 93235841 to 93301065 65224 + protein coding gene sushi, nidogen and EGF-like domains 1
Mir6901 1 93274549 to 93274610 61 + miRNA gene microRNA 6901
Tssr8167 1 93300274 to 93300283 9 + TSS region transcription start site region 8167
Mterf4 1 93301205 to 93305879 4674 - protein coding gene mitochondrial transcription termination factor 4
Cpgi597 1 93305541 to 93306133 592 CpG island CpG island 597
Tssr13013 1 93305850 to 93305885 35 - TSS region transcription start site region 13013
Tssr8168 1 93305944 to 93305961 17 + TSS region transcription start site region 8168
Gm28535 1 93305964 to 93317309 11345 + antisense lncRNA gene predicted gene 28535
Gm7867 1 93306694 to 93307239 545 - pseudogene predicted gene 7867
Tssr13014 1 93307268 to 93307277 9 - TSS region transcription start site region 13014
Pask 1 93309437 to 93343399 33962 - protein coding gene PAS domain containing serine/threonine kinase
Cpgi598 1 93342489 to 93344200 1711 CpG island CpG island 598
Tssr13015 1 93342562 to 93342572 10 - TSS region transcription start site region 13015
Tssr13016 1 93342582 to 93342597 15 - TSS region transcription start site region 13016
Tssr13017 1 93342609 to 93342620 11 - TSS region transcription start site region 13017
Tssr13018 1 93342622 to 93342631 9 - TSS region transcription start site region 13018
Tssr13019 1 93342734 to 93342803 69 - TSS region transcription start site region 13019
Tssr13020 1 93342868 to 93342889 21 - TSS region transcription start site region 13020
Tssr13021 1 93342901 to 93342911 10 - TSS region transcription start site region 13021
Tssr13022 1 93343498 to 93343524 26 - TSS region transcription start site region 13022
Tssr8169 1 93343618 to 93343672 54 + TSS region transcription start site region 8169
Ppp1r7 1 93343645 to 93367622 23977 + protein coding gene protein phosphatase 1, regulatory subunit 7
Tssr163 1 93343682 to 93343691 9 + TSS region transcription start site region 163
Mir6902 1 93346092 to 93346155 63 + miRNA gene microRNA 6902
Mir6345 1 93352158 to 93352285 127 + miRNA gene microRNA 6345
Gm26446 1 93363255 to 93363357 102 + snRNA gene predicted gene, 26446
Tssr8170 1 93373796 to 93373807 11 + TSS region transcription start site region 8170
Tssr8171 1 93373810 to 93373839 29 + TSS region transcription start site region 8171
Tssr8172 1 93373844 to 93373860 16 + TSS region transcription start site region 8172
Tssr8173 1 93373864 to 93373871 7 + TSS region transcription start site region 8173
Tssr8174 1 93373874 to 93373899 25 + TSS region transcription start site region 8174
Ano7 1 93373930 to 93404303 30373 + protein coding gene anoctamin 7
Cpgi599 1 93394349 to 93394675 326 CpG island CpG island 599
Cpgi600 1 93401244 to 93401974 730 CpG island CpG island 600
Hdlbp 1 93405940 to 93478815 72875 - protein coding gene high density lipoprotein (HDL) binding protein
Gm17415 1 93421700 to 93422488 788 + pseudogene predicted gene, 17415
Tssr13023 1 93425286 to 93425317 31 - TSS region transcription start site region 13023
Tssr13024 1 93425363 to 93425388 25 - TSS region transcription start site region 13024
Tssr13025 1 93428217 to 93428233 16 - TSS region transcription start site region 13025
Tssr13026 1 93429400 to 93429418 18 - TSS region transcription start site region 13026
Tssr13027 1 93429477 to 93429489 12 - TSS region transcription start site region 13027
Tssr13028 1 93441862 to 93441863 1 - TSS region transcription start site region 13028
Cpgi601 1 93444846 to 93446020 1174 CpG island CpG island 601
Tssr13029 1 93445422 to 93445436 14 - TSS region transcription start site region 13029
Tssr13030 1 93445642 to 93445660 18 - TSS region transcription start site region 13030
Tssr164 1 93445803 to 93445808 5 + TSS region transcription start site region 164
Cpgi602 1 93478098 to 93479695 1597 CpG island CpG island 602
Tssr13031 1 93478329 to 93478391 62 - TSS region transcription start site region 13031
Tssr8175 1 93478508 to 93478533 25 + TSS region transcription start site region 8175
Tssr13032 1 93478785 to 93478823 38 - TSS region transcription start site region 13032
Tssr13033 1 93478862 to 93478868 6 - TSS region transcription start site region 13033
Sept2 1 93478968 to 93509733 30765 + protein coding gene septin 2
Tssr8176 1 93478981 to 93479054 73 + TSS region transcription start site region 8176
Tssr8177 1 93479068 to 93479073 5 + TSS region transcription start site region 8177
Tssr8178 1 93479087 to 93479098 11 + TSS region transcription start site region 8178
Tssr8179 1 93479198 to 93479234 36 + TSS region transcription start site region 8179
Tssr8180 1 93482594 to 93482600 6 + TSS region transcription start site region 8180
Tssr165 1 93489932 to 93489934 2 + TSS region transcription start site region 165
Tssr8181 1 93501568 to 93501581 13 + TSS region transcription start site region 8181
Tssr8182 1 93507880 to 93507895 15 + TSS region transcription start site region 8182
Tssr8183 1 93509125 to 93509157 32 + TSS region transcription start site region 8183
Tssr8184 1 93509162 to 93509179 17 + TSS region transcription start site region 8184
Cpgi603 1 93511526 to 93512695 1169 CpG island CpG island 603
Tssr166 1 93511913 to 93511920 7 - TSS region transcription start site region 166
Tssr8185 1 93512088 to 93512125 37 + TSS region transcription start site region 8185
Farp2 1 93512104 to 93621976 109872 + protein coding gene FERM, RhoGEF and pleckstrin domain protein 2
Tssr8186 1 93512128 to 93512156 28 + TSS region transcription start site region 8186
Gm37250 1 93531815 to 93534202 2387 + unclassified gene predicted gene, 37250
D1Mit534 1 93544151 to 93544281 130 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 534
Gm41920 1 93550299 to 93554685 4386 + lncRNA gene predicted gene, 41920
Gm18874 1 93585460 to 93586000 540 - pseudogene predicted gene, 18874
D1Mit60 1 93609133 to 93609275 142 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 60
Stk25 1 93620751 to 93654216 33465 - protein coding gene serine/threonine kinase 25 (yeast)
Tssr13034 1 93621996 to 93622000 4 - TSS region transcription start site region 13034
Cpgi604 1 93634905 to 93636204 1299 CpG island CpG island 604
Tssr13035 1 93635107 to 93635117 10 - TSS region transcription start site region 13035
Tssr13036 1 93635137 to 93635188 51 - TSS region transcription start site region 13036
Tssr8187 1 93635169 to 93635210 41 + TSS region transcription start site region 8187
Gm28536 1 93635193 to 93636509 1316 + antisense lncRNA gene predicted gene 28536
Tssr13037 1 93635621 to 93635632 11 - TSS region transcription start site region 13037
Tssr13038 1 93635641 to 93635652 11 - TSS region transcription start site region 13038
Tssr13039 1 93635659 to 93635674 15 - TSS region transcription start site region 13039
Tssr13040 1 93635692 to 93635711 19 - TSS region transcription start site region 13040
Tssr13041 1 93635750 to 93635761 11 - TSS region transcription start site region 13041
Tssr13042 1 93654144 to 93654155 11 - TSS region transcription start site region 13042
Tssr13043 1 93654198 to 93654212 14 - TSS region transcription start site region 13043
Cpgi605 1 93668883 to 93669112 229 CpG island CpG island 605
Cpgi606 1 93685409 to 93686934 1525 CpG island CpG island 606
Tssr8188 1 93685468 to 93685484 16 + TSS region transcription start site region 8188
Tssr8189 1 93685574 to 93685678 104 + TSS region transcription start site region 8189
Bok 1 93685660 to 93695764 10104 + protein coding gene BCL2-related ovarian killer
Tssr8190 1 93685683 to 93685709 26 + TSS region transcription start site region 8190
Tssr8191 1 93685738 to 93685807 69 + TSS region transcription start site region 8191
Tssr8192 1 93685906 to 93685929 23 + TSS region transcription start site region 8192
Tssr8193 1 93693720 to 93693735 15 + TSS region transcription start site region 8193
Thap4 1 93705391 to 93754838 49447 - protein coding gene THAP domain containing 4
Tssr8194 1 93719653 to 93719657 4 + TSS region transcription start site region 8194
Gm10550 1 93731104 to 93751072 19968 + antisense lncRNA gene predicted gene 10550
Tssr13044 1 93731899 to 93731929 30 - TSS region transcription start site region 13044
Tssr13045 1 93731931 to 93731944 13 - TSS region transcription start site region 13045
Tssr13046 1 93731961 to 93731972 11 - TSS region transcription start site region 13046
Cpgi607 1 93753793 to 93755493 1700 CpG island CpG island 607
Tssr13047 1 93754561 to 93754678 117 - TSS region transcription start site region 13047
Tssr13048 1 93754690 to 93754707 17 - TSS region transcription start site region 13048
Tssr13049 1 93754769 to 93754806 37 - TSS region transcription start site region 13049
Tssr13050 1 93754811 to 93754857 46 - TSS region transcription start site region 13050
Tssr8195 1 93754899 to 93754932 33 + TSS region transcription start site region 8195
Tssr8196 1 93754933 to 93754946 13 + TSS region transcription start site region 8196
Tssr8197 1 93754952 to 93755029 77 + TSS region transcription start site region 8197
Atg4b 1 93755033 to 93789529 34496 + protein coding gene autophagy related 4B, cysteine peptidase
Tssr8198 1 93755148 to 93755168 20 + TSS region transcription start site region 8198
Tssr8199 1 93755174 to 93755193 19 + TSS region transcription start site region 8199
Dtymk 1 93792576 to 93801934 9358 - protein coding gene deoxythymidylate kinase
D1Ertd203 1 93792676 to 93792922 246 DNA segment DNA segment, Chr 1, ERATO Doi 203
Tssr13051 1 93799358 to 93799370 12 - TSS region transcription start site region 13051
Cpgi608 1 93801605 to 93802292 687 CpG island CpG island 608
Tssr13052 1 93801840 to 93801945 105 - TSS region transcription start site region 13052
Tssr8200 1 93802151 to 93802167 16 + TSS region transcription start site region 8200
Cpgi609 1 93803435 to 93804718 1283 CpG island CpG island 609
Tssr13053 1 93803770 to 93803817 47 - TSS region transcription start site region 13053
Tssr8201 1 93803945 to 93803998 53 + TSS region transcription start site region 8201
Ing5 1 93803965 to 93822101 18136 + protein coding gene inhibitor of growth family, member 5
Gm22089 1 93808570 to 93808671 101 - snRNA gene predicted gene, 22089
Tssr8202 1 93811809 to 93811846 37 + TSS region transcription start site region 8202
Cpgi610 1 93824876 to 93825683 807 CpG island CpG island 610
D2hgdh 1 93824909 to 93852348 27439 + protein coding gene D-2-hydroxyglutarate dehydrogenase
Tssr8203 1 93825230 to 93825251 21 + TSS region transcription start site region 8203
Tssr8204 1 93825270 to 93825305 35 + TSS region transcription start site region 8204
Tssr13054 1 93825463 to 93825490 27 - TSS region transcription start site region 13054
Tssr8205 1 93825612 to 93825632 20 + TSS region transcription start site region 8205
Cpgi611 1 93826370 to 93826659 289 CpG island CpG island 611
Tssr8206 1 93831166 to 93831170 4 + TSS region transcription start site region 8206
Tssr8207 1 93859846 to 93859866 20 + TSS region transcription start site region 8207
Gal3st2 1 93861344 to 93876494 15150 + protein coding gene galactose-3-O-sulfotransferase 2
Gm30204 1 93890091 to 93898973 8882 + lncRNA gene predicted gene, 30204
Gm18666 1 93906809 to 93916968 10159 + pseudogene predicted gene, 18666
Gal3st2b 1 93918437 to 93942645 24208 + protein coding gene galactose-3-O-sulfotransferase 2B
Gm7889 1 93975353 to 93985816 10463 + pseudogene predicted gene 7889
Gal3st2c 1 93990509 to 94011539 21030 + protein coding gene galactose-3-O-sulfotransferase 2C
Tssr8208 1 93996256 to 93996280 24 + TSS region transcription start site region 8208
9130414P19Rik 1 94015049 to 94017146 2097 unclassified gene RIKEN cDNA 9130414P19 gene
Tssr8209 1 94016908 to 94016912 4 + TSS region transcription start site region 8209
Tssr8210 1 94020459 to 94020485 26 + TSS region transcription start site region 8210
Neu4 1 94020493 to 94028334 7841 + protein coding gene sialidase 4
Cpgi612 1 94022436 to 94022960 524 CpG island CpG island 612
Cpgi613 1 94035275 to 94035488 213 CpG island CpG island 613
Tssr13055 1 94035483 to 94035491 8 - TSS region transcription start site region 13055
Pdcd1 1 94038305 to 94052553 14248 - protein coding gene programmed cell death 1
Tssr13056 1 94052557 to 94052573 16 - TSS region transcription start site region 13056
Tssr13057 1 94052577 to 94052587 10 - TSS region transcription start site region 13057
Tssr8211 1 94075168 to 94075173 5 + TSS region transcription start site region 8211
Tssr8212 1 94075188 to 94075196 8 + TSS region transcription start site region 8212
Tssr8213 1 94077023 to 94077027 4 + TSS region transcription start site region 8213
Gm7891 1 94204417 to 94205259 842 + pseudogene predicted gene 7891
Tir6 1 120601949 to 93609133 -26992816 QTL trypanosome infection response 6
Hfnq1 1 123709030 to 93382588 -30326442 QTL hair follicle number QTL 1