Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:93068725-93331072

45 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Kif1a	1	93015455 to 93101893	86438	-	protein coding gene	kinesin family member 1A
Tssr12999	1	93071012 to 93071021	9	-	TSS region	transcription start site region 12999
Cpgi592	1	93071637 to 93071863	226		CpG island	CpG island 592
Tssr13000	1	93073091 to 93073104	13	-	TSS region	transcription start site region 13000
Tssr13001	1	93076197 to 93076208	11	-	TSS region	transcription start site region 13001
Tssr13002	1	93076226 to 93076238	12	-	TSS region	transcription start site region 13002
Tssr13003	1	93076243 to 93076255	12	-	TSS region	transcription start site region 13003
Tssr13004	1	93083971 to 93083974	3	-	TSS region	transcription start site region 13004
Cpgi593	1	93100169 to 93102233	2064		CpG island	CpG island 593
Tssr13005	1	93101810 to 93101821	11	-	TSS region	transcription start site region 13005
Tssr13006	1	93101825 to 93101849	24	-	TSS region	transcription start site region 13006
Tssr13007	1	93101854 to 93101879	25	-	TSS region	transcription start site region 13007
Gm36472	1	93114811 to 93115895	1084	+	lncRNA gene	predicted gene, 36472
Gm28086	1	93122931 to 93124103	1172	-	lincRNA gene	predicted gene 28086
Agxt	1	93135240 to 93145421	10181	+	protein coding gene	alanine-glyoxylate aminotransferase
Tssr8158	1	93135244 to 93135256	12	+	TSS region	transcription start site region 8158
Tssr8159	1	93135310 to 93135326	16	+	TSS region	transcription start site region 8159
Tssr8160	1	93135332 to 93135339	7	+	TSS region	transcription start site region 8160
Mab21l4	1	93151349 to 93160948	9599	-	protein coding gene	mab-21-like 4
Tssr13008	1	93160192 to 93160203	11	-	TSS region	transcription start site region 13008
Tssr13009	1	93160234 to 93160245	11	-	TSS region	transcription start site region 13009
Tssr13010	1	93160267 to 93160285	18	-	TSS region	transcription start site region 13010
Tssr13011	1	93160839 to 93160851	12	-	TSS region	transcription start site region 13011
Tssr13012	1	93160907 to 93160955	48	-	TSS region	transcription start site region 13012
Tssr8161	1	93168598 to 93168619	21	+	TSS region	transcription start site region 8161
Crocc2	1	93168725 to 93231072	62347	+	protein coding gene	ciliary rootlet coiled-coil, rootletin family member 2
Cpgi594	1	93176410 to 93177064	654		CpG island	CpG island 594
Tssr8162	1	93211722 to 93211724	2	+	TSS region	transcription start site region 8162
Tssr8163	1	93217465 to 93217467	2	+	TSS region	transcription start site region 8163
Cpgi595	1	93223934 to 93224323	389		CpG island	CpG island 595
Tssr8164	1	93227519 to 93227530	11	+	TSS region	transcription start site region 8164
Cpgi596	1	93235416 to 93236795	1379		CpG island	CpG island 596
Tssr8165	1	93235836 to 93235842	6	+	TSS region	transcription start site region 8165
Sned1	1	93235841 to 93301065	65224	+	protein coding gene	sushi, nidogen and EGF-like domains 1
Tssr8166	1	93238869 to 93238873	4	+	TSS region	transcription start site region 8166
Mir6901	1	93274549 to 93274610	61	+	miRNA gene	microRNA 6901
Tssr8167	1	93300274 to 93300283	9	+	TSS region	transcription start site region 8167
Mterf4	1	93301205 to 93305879	4674	-	protein coding gene	mitochondrial transcription termination factor 4
Cpgi597	1	93305541 to 93306133	592		CpG island	CpG island 597
Tssr13013	1	93305850 to 93305885	35	-	TSS region	transcription start site region 13013
Tssr8168	1	93305944 to 93305961	17	+	TSS region	transcription start site region 8168
Gm28535	1	93305964 to 93317309	11345	+	antisense lncRNA gene	predicted gene 28535
Gm7867	1	93306694 to 93307239	545	-	pseudogene	predicted gene 7867
Tssr13014	1	93307268 to 93307277	9	-	TSS region	transcription start site region 13014
Pask	1	93309437 to 93343399	33962	-	protein coding gene	PAS domain containing serine/threonine kinase