Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:93025841-93511065

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kif1a 1 93015455 to 93101893 86438 - protein coding gene kinesin family member 1A
Tssr12998 1 93068679 to 93068719 40 - TSS region transcription start site region 12998
Tssr12999 1 93071012 to 93071021 9 - TSS region transcription start site region 12999
Cpgi592 1 93071637 to 93071863 226 CpG island CpG island 592
Tssr13000 1 93073091 to 93073104 13 - TSS region transcription start site region 13000
Tssr13001 1 93076197 to 93076208 11 - TSS region transcription start site region 13001
Tssr13002 1 93076226 to 93076238 12 - TSS region transcription start site region 13002
Tssr13003 1 93076243 to 93076255 12 - TSS region transcription start site region 13003
Tssr13004 1 93083971 to 93083974 3 - TSS region transcription start site region 13004
Cpgi593 1 93100169 to 93102233 2064 CpG island CpG island 593
Tssr13005 1 93101810 to 93101821 11 - TSS region transcription start site region 13005
Tssr13006 1 93101825 to 93101849 24 - TSS region transcription start site region 13006
Tssr13007 1 93101854 to 93101879 25 - TSS region transcription start site region 13007
Gm36472 1 93114811 to 93115895 1084 + lncRNA gene predicted gene, 36472
Gm28086 1 93122931 to 93124103 1172 - lincRNA gene predicted gene 28086
Agxt 1 93135240 to 93145421 10181 + protein coding gene alanine-glyoxylate aminotransferase
Tssr8158 1 93135244 to 93135256 12 + TSS region transcription start site region 8158
Tssr8159 1 93135310 to 93135326 16 + TSS region transcription start site region 8159
Tssr8160 1 93135332 to 93135339 7 + TSS region transcription start site region 8160
Mab21l4 1 93151349 to 93160948 9599 - protein coding gene mab-21-like 4
Tssr13008 1 93160192 to 93160203 11 - TSS region transcription start site region 13008
Tssr13009 1 93160234 to 93160245 11 - TSS region transcription start site region 13009
Tssr13010 1 93160267 to 93160285 18 - TSS region transcription start site region 13010
Tssr13011 1 93160839 to 93160851 12 - TSS region transcription start site region 13011
Tssr13012 1 93160907 to 93160955 48 - TSS region transcription start site region 13012
Tssr8161 1 93168598 to 93168619 21 + TSS region transcription start site region 8161
Crocc2 1 93168725 to 93231072 62347 + protein coding gene ciliary rootlet coiled-coil, rootletin family member 2
Cpgi594 1 93176410 to 93177064 654 CpG island CpG island 594
Tssr8162 1 93211722 to 93211724 2 + TSS region transcription start site region 8162
Tssr8163 1 93217465 to 93217467 2 + TSS region transcription start site region 8163
Cpgi595 1 93223934 to 93224323 389 CpG island CpG island 595
Tssr8164 1 93227519 to 93227530 11 + TSS region transcription start site region 8164
Cpgi596 1 93235416 to 93236795 1379 CpG island CpG island 596
Tssr8165 1 93235836 to 93235842 6 + TSS region transcription start site region 8165
Sned1 1 93235841 to 93301065 65224 + protein coding gene sushi, nidogen and EGF-like domains 1
Tssr8166 1 93238869 to 93238873 4 + TSS region transcription start site region 8166
Mir6901 1 93274549 to 93274610 61 + miRNA gene microRNA 6901
Tssr8167 1 93300274 to 93300283 9 + TSS region transcription start site region 8167
Mterf4 1 93301205 to 93305879 4674 - protein coding gene mitochondrial transcription termination factor 4
Cpgi597 1 93305541 to 93306133 592 CpG island CpG island 597
Tssr13013 1 93305850 to 93305885 35 - TSS region transcription start site region 13013
Tssr8168 1 93305944 to 93305961 17 + TSS region transcription start site region 8168
Gm28535 1 93305964 to 93317309 11345 + antisense lncRNA gene predicted gene 28535
Gm7867 1 93306694 to 93307239 545 - pseudogene predicted gene 7867
Tssr13014 1 93307268 to 93307277 9 - TSS region transcription start site region 13014
Pask 1 93309437 to 93343399 33962 - protein coding gene PAS domain containing serine/threonine kinase
Cpgi598 1 93342489 to 93344200 1711 CpG island CpG island 598
Tssr13015 1 93342562 to 93342572 10 - TSS region transcription start site region 13015
Tssr13016 1 93342582 to 93342597 15 - TSS region transcription start site region 13016
Tssr13017 1 93342609 to 93342620 11 - TSS region transcription start site region 13017
Tssr13018 1 93342622 to 93342631 9 - TSS region transcription start site region 13018
Tssr13019 1 93342734 to 93342803 69 - TSS region transcription start site region 13019
Tssr13020 1 93342868 to 93342889 21 - TSS region transcription start site region 13020
Tssr13021 1 93342901 to 93342911 10 - TSS region transcription start site region 13021
Tssr13022 1 93343498 to 93343524 26 - TSS region transcription start site region 13022
Tssr8169 1 93343618 to 93343672 54 + TSS region transcription start site region 8169
Ppp1r7 1 93343645 to 93367622 23977 + protein coding gene protein phosphatase 1, regulatory subunit 7
Tssr163 1 93343682 to 93343691 9 + TSS region transcription start site region 163
Mir6902 1 93346092 to 93346155 63 + miRNA gene microRNA 6902
Mir6345 1 93352158 to 93352285 127 + miRNA gene microRNA 6345
Gm26446 1 93363255 to 93363357 102 + snRNA gene predicted gene, 26446
Tssr8170 1 93373796 to 93373807 11 + TSS region transcription start site region 8170
Tssr8171 1 93373810 to 93373839 29 + TSS region transcription start site region 8171
Tssr8172 1 93373844 to 93373860 16 + TSS region transcription start site region 8172
Tssr8173 1 93373864 to 93373871 7 + TSS region transcription start site region 8173
Tssr8174 1 93373874 to 93373899 25 + TSS region transcription start site region 8174
Ano7 1 93373930 to 93404303 30373 + protein coding gene anoctamin 7
Cpgi599 1 93394349 to 93394675 326 CpG island CpG island 599
Cpgi600 1 93401244 to 93401974 730 CpG island CpG island 600
Hdlbp 1 93405940 to 93478815 72875 - protein coding gene high density lipoprotein (HDL) binding protein
Gm17415 1 93421700 to 93422488 788 + pseudogene predicted gene, 17415
Tssr13023 1 93425286 to 93425317 31 - TSS region transcription start site region 13023
Tssr13024 1 93425363 to 93425388 25 - TSS region transcription start site region 13024
Tssr13025 1 93428217 to 93428233 16 - TSS region transcription start site region 13025
Tssr13026 1 93429400 to 93429418 18 - TSS region transcription start site region 13026
Tssr13027 1 93429477 to 93429489 12 - TSS region transcription start site region 13027
Tssr13028 1 93441862 to 93441863 1 - TSS region transcription start site region 13028
Cpgi601 1 93444846 to 93446020 1174 CpG island CpG island 601
Tssr13029 1 93445422 to 93445436 14 - TSS region transcription start site region 13029
Tssr13030 1 93445642 to 93445660 18 - TSS region transcription start site region 13030
Tssr164 1 93445803 to 93445808 5 + TSS region transcription start site region 164
Cpgi602 1 93478098 to 93479695 1597 CpG island CpG island 602
Tssr13031 1 93478329 to 93478391 62 - TSS region transcription start site region 13031
Tssr8175 1 93478508 to 93478533 25 + TSS region transcription start site region 8175
Tssr13032 1 93478785 to 93478823 38 - TSS region transcription start site region 13032
Tssr13033 1 93478862 to 93478868 6 - TSS region transcription start site region 13033
Sept2 1 93478968 to 93509733 30765 + protein coding gene septin 2
Tssr8176 1 93478981 to 93479054 73 + TSS region transcription start site region 8176
Tssr8177 1 93479068 to 93479073 5 + TSS region transcription start site region 8177
Tssr8178 1 93479087 to 93479098 11 + TSS region transcription start site region 8178
Tssr8179 1 93479198 to 93479234 36 + TSS region transcription start site region 8179
Tssr8180 1 93482594 to 93482600 6 + TSS region transcription start site region 8180
Tssr165 1 93489932 to 93489934 2 + TSS region transcription start site region 165
Tssr8181 1 93501568 to 93501581 13 + TSS region transcription start site region 8181
Tssr8182 1 93507880 to 93507895 15 + TSS region transcription start site region 8182
Tssr8183 1 93509125 to 93509157 32 + TSS region transcription start site region 8183
Tssr8184 1 93509162 to 93509179 17 + TSS region transcription start site region 8184
Hfnq1 1 123709030 to 93382588 -30326442 QTL hair follicle number QTL 1