Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:92833141-93213153

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lore1 1 75572547 to 93013355 17440808 QTL loss of righting induced by ethanol 1
Gm29481 1 92820958 to 92837896 16938 - antisense lncRNA gene predicted gene 29481
Gpc1 1 92831686 to 92860211 28525 + protein coding gene glypican 1
Tssr12980 1 92837883 to 92837901 18 - TSS region transcription start site region 12980
Gm29480 1 92842177 to 92848771 6594 - antisense lncRNA gene predicted gene 29480
Cpgi586 1 92848465 to 92848851 386 CpG island CpG island 586
Tssr8131 1 92848583 to 92848617 34 + TSS region transcription start site region 8131
Tssr8132 1 92848625 to 92848672 47 + TSS region transcription start site region 8132
Tssr8133 1 92848708 to 92848727 19 + TSS region transcription start site region 8133
Mir149 1 92850378 to 92850443 65 + miRNA gene microRNA 149
Tssr8134 1 92855966 to 92855985 19 + TSS region transcription start site region 8134
Tssr8135 1 92858553 to 92858576 23 + TSS region transcription start site region 8135
Tssr8136 1 92859692 to 92859703 11 + TSS region transcription start site region 8136
Tssr8137 1 92859835 to 92859839 4 + TSS region transcription start site region 8137
Ankmy1 1 92860361 to 92902987 42626 - protein coding gene ankyrin repeat and MYND domain containing 1
Gm36184 1 92864579 to 92875711 11132 + lncRNA gene predicted gene, 36184
Tssr8138 1 92865178 to 92865210 32 + TSS region transcription start site region 8138
Cpgi587 1 92879262 to 92879419 157 CpG island CpG island 587
Tssr12981 1 92880218 to 92880231 13 - TSS region transcription start site region 12981
Tssr8139 1 92894898 to 92894901 3 + TSS region transcription start site region 8139
D1Mit371.1a 1 92898556 to 92898667 111 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 371.1a
Tssr12982 1 92902869 to 92902875 6 - TSS region transcription start site region 12982
Tssr12983 1 92902883 to 92902921 38 - TSS region transcription start site region 12983
Cpgi588 1 92902903 to 92903314 411 CpG island CpG island 588
Cpgi589 1 92906760 to 92907746 986 CpG island CpG island 589
Tssr12984 1 92906860 to 92906887 27 - TSS region transcription start site region 12984
Tssr8140 1 92906959 to 92907036 77 + TSS region transcription start site region 8140
Dusp28 1 92906981 to 92908435 1454 + protein coding gene dual specificity phosphatase 28
Tssr12985 1 92908119 to 92908130 11 - TSS region transcription start site region 12985
5033417F24Rik 1 92908378 to 92910689 2311 - antisense lncRNA gene RIKEN cDNA 5033417F24 gene
Cpgi590 1 92910408 to 92911960 1552 CpG island CpG island 590
Tssr8141 1 92910612 to 92910637 25 + TSS region transcription start site region 8141
Tssr8142 1 92910640 to 92910665 25 + TSS region transcription start site region 8142
Tssr8143 1 92910758 to 92910769 11 + TSS region transcription start site region 8143
Rnpepl1 1 92910803 to 92920585 9782 + protein coding gene arginyl aminopeptidase (aminopeptidase B)-like 1
Tssr8144 1 92910805 to 92910834 29 + TSS region transcription start site region 8144
Tssr8145 1 92910901 to 92910912 11 + TSS region transcription start site region 8145
Tssr8146 1 92911016 to 92911027 11 + TSS region transcription start site region 8146
Tssr8147 1 92912045 to 92912063 18 + TSS region transcription start site region 8147
Tssr12986 1 92919273 to 92919299 26 - TSS region transcription start site region 12986
Tssr12987 1 92919332 to 92919339 7 - TSS region transcription start site region 12987
9430060I03Rik 1 92933526 to 92950590 17064 - antisense lncRNA gene RIKEN cDNA 9430060I03 gene
Cpgi591 1 92934031 to 92935135 1104 CpG island CpG island 591
Capn10 1 92934408 to 92947948 13540 + protein coding gene calpain 10
Tssr8148 1 92934719 to 92934791 72 + TSS region transcription start site region 8148
Tssr8149 1 92934806 to 92934818 12 + TSS region transcription start site region 8149
Tssr8150 1 92935621 to 92935622 1 + TSS region transcription start site region 8150
Tssr12988 1 92950700 to 92950731 31 - TSS region transcription start site region 12988
Tssr8151 1 92950844 to 92950877 33 + TSS region transcription start site region 8151
Gpr35 1 92950865 to 92986391 35526 + protein coding gene G protein-coupled receptor 35
Tssr8152 1 92950894 to 92950903 9 + TSS region transcription start site region 8152
Tssr8153 1 92973113 to 92973127 14 + TSS region transcription start site region 8153
Tssr8154 1 92973176 to 92973192 16 + TSS region transcription start site region 8154
Tssr8155 1 92973201 to 92973213 12 + TSS region transcription start site region 8155
Tssr12989 1 92993600 to 92993603 3 - TSS region transcription start site region 12989
Tssr12990 1 92997038 to 92997045 7 - TSS region transcription start site region 12990
Tssr12991 1 92997049 to 92997072 23 - TSS region transcription start site region 12991
Tssr12992 1 92997076 to 92997084 8 - TSS region transcription start site region 12992
Gm36424 1 92997150 to 92997933 783 + lncRNA gene predicted gene, 36424
Gm18697 1 92999976 to 93000648 672 - pseudogene predicted gene, 18697
Tssr8156 1 93006328 to 93006348 20 + TSS region transcription start site region 8156
Aqp12 1 93006334 to 93012269 5935 + protein coding gene aquaporin 12
Tssr8157 1 93006349 to 93006393 44 + TSS region transcription start site region 8157
D1Mit45 1 93013187 to 93013355 168 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 45
Kif1a 1 93015455 to 93101893 86438 - protein coding gene kinesin family member 1A
Tssr12993 1 93015972 to 93016048 76 - TSS region transcription start site region 12993
Tssr12994 1 93016049 to 93016065 16 - TSS region transcription start site region 12994
Tssr12995 1 93016079 to 93016091 12 - TSS region transcription start site region 12995
Tssr12996 1 93023071 to 93023120 49 - TSS region transcription start site region 12996
Tssr12997 1 93023141 to 93023153 12 - TSS region transcription start site region 12997
Tssr12998 1 93068679 to 93068719 40 - TSS region transcription start site region 12998
Tssr12999 1 93071012 to 93071021 9 - TSS region transcription start site region 12999
Cpgi592 1 93071637 to 93071863 226 CpG island CpG island 592
Tssr13000 1 93073091 to 93073104 13 - TSS region transcription start site region 13000
Tssr13001 1 93076197 to 93076208 11 - TSS region transcription start site region 13001
Tssr13002 1 93076226 to 93076238 12 - TSS region transcription start site region 13002
Tssr13003 1 93076243 to 93076255 12 - TSS region transcription start site region 13003
Tssr13004 1 93083971 to 93083974 3 - TSS region transcription start site region 13004
Cpgi593 1 93100169 to 93102233 2064 CpG island CpG island 593
Tssr13005 1 93101810 to 93101821 11 - TSS region transcription start site region 13005
Tssr13006 1 93101825 to 93101849 24 - TSS region transcription start site region 13006
Tssr13007 1 93101854 to 93101879 25 - TSS region transcription start site region 13007
Gm36472 1 93114811 to 93115895 1084 + lncRNA gene predicted gene, 36472
Gm28086 1 93122931 to 93124103 1172 - lincRNA gene predicted gene 28086
Agxt 1 93135240 to 93145421 10181 + protein coding gene alanine-glyoxylate aminotransferase
Tssr8158 1 93135244 to 93135256 12 + TSS region transcription start site region 8158
Tssr8159 1 93135310 to 93135326 16 + TSS region transcription start site region 8159
Tssr8160 1 93135332 to 93135339 7 + TSS region transcription start site region 8160
Mab21l4 1 93151349 to 93160948 9599 - protein coding gene mab-21-like 4
Tssr13008 1 93160192 to 93160203 11 - TSS region transcription start site region 13008
Tssr13009 1 93160234 to 93160245 11 - TSS region transcription start site region 13009
Tssr13010 1 93160267 to 93160285 18 - TSS region transcription start site region 13010
Tssr13011 1 93160839 to 93160851 12 - TSS region transcription start site region 13011
Tssr13012 1 93160907 to 93160955 48 - TSS region transcription start site region 13012
Tssr8161 1 93168598 to 93168619 21 + TSS region transcription start site region 8161
Crocc2 1 93168725 to 93231072 62347 + protein coding gene ciliary rootlet coiled-coil, rootletin family member 2
Cpgi594 1 93176410 to 93177064 654 CpG island CpG island 594
Tssr8162 1 93211722 to 93211724 2 + TSS region transcription start site region 8162
Bwq7 1 124570059 to 93013187 -31556872 QTL body weight, QTL 7