Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:91960121-92900532

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hdac4 1 91928779 to 92195670 266891 - protein coding gene histone deacetylase 4
Gm37048 1 91975987 to 91981564 5577 + unclassified gene predicted gene, 37048
Tssr12956 1 91978486 to 91978489 3 - TSS region transcription start site region 12956
Tssr12957 1 91984655 to 91984663 8 - TSS region transcription start site region 12957
Tssr8110 1 91984781 to 91984790 9 + TSS region transcription start site region 8110
Gm26720 1 91989051 to 91992628 3577 + lincRNA gene predicted gene, 26720
Tssr12958 1 92006844 to 92006883 39 - TSS region transcription start site region 12958
Gm37036 1 92019592 to 92022097 2505 - unclassified gene predicted gene, 37036
Tssr12959 1 92048521 to 92048528 7 - TSS region transcription start site region 12959
Tssr8111 1 92048709 to 92048720 11 + TSS region transcription start site region 8111
Tssr159 1 92048749 to 92048755 6 + TSS region transcription start site region 159
Tssr12960 1 92048954 to 92049000 46 - TSS region transcription start site region 12960
Tssr12961 1 92049004 to 92049040 36 - TSS region transcription start site region 12961
Tssr160 1 92049085 to 92049093 8 - TSS region transcription start site region 160
Tssr8112 1 92049093 to 92049104 11 + TSS region transcription start site region 8112
Tssr8113 1 92049118 to 92049121 3 + TSS region transcription start site region 8113
Tssr8114 1 92049130 to 92049156 26 + TSS region transcription start site region 8114
Tssr8115 1 92052498 to 92052547 49 + TSS region transcription start site region 8115
Tssr8116 1 92058935 to 92058948 13 + TSS region transcription start site region 8116
Tssr8117 1 92058970 to 92058977 7 + TSS region transcription start site region 8117
Tssr12962 1 92113327 to 92113334 7 - TSS region transcription start site region 12962
Tssr12963 1 92114615 to 92114619 4 - TSS region transcription start site region 12963
Tssr12964 1 92126843 to 92126859 16 - TSS region transcription start site region 12964
Tssr12965 1 92127890 to 92127903 13 - TSS region transcription start site region 12965
Tssr12966 1 92127936 to 92127963 27 - TSS region transcription start site region 12966
D1Mit365 1 92129184 to 92129282 98 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 365
Cpgi582 1 92179328 to 92181252 1924 CpG island CpG island 582
Tssr12967 1 92180187 to 92180263 76 - TSS region transcription start site region 12967
Tssr12968 1 92180271 to 92180324 53 - TSS region transcription start site region 12968
Tssr12969 1 92318256 to 92318259 3 - TSS region transcription start site region 12969
Gm29099 1 92324510 to 92329888 5378 + lincRNA gene predicted gene 29099
Gm35992 1 92379557 to 92393620 14063 + lncRNA gene predicted gene, 35992
Tssr8118 1 92379624 to 92379640 16 + TSS region transcription start site region 8118
Gm7837 1 92430121 to 92430532 411 - pseudogene predicted gene 7837
Tssr12970 1 92432169 to 92432195 26 - TSS region transcription start site region 12970
Tssr8119 1 92439707 to 92439729 22 + TSS region transcription start site region 8119
Ndufa10 1 92439708 to 92473758 34050 - protein coding gene NADH:ubiquinone oxidoreductase subunit A10
Tssr12971 1 92439784 to 92439792 8 - TSS region transcription start site region 12971
Mir6900 1 92464483 to 92464542 59 - miRNA gene microRNA 6900
Cpgi583 1 92473079 to 92474220 1141 CpG island CpG island 583
Tssr12972 1 92473736 to 92473799 63 - TSS region transcription start site region 12972
Tssr12973 1 92473801 to 92473808 7 - TSS region transcription start site region 12973
Olfr1416 1 92479681 to 92480619 938 - protein coding gene olfactory receptor 1416
Olfr1415 1 92490818 to 92491753 935 - protein coding gene olfactory receptor 1415
Olfr1414 1 92511048 to 92518515 7467 - protein coding gene olfactory receptor 1414
1700054K02Rik 1 92572374 to 92572749 375 - antisense lncRNA gene RIKEN cDNA 1700054K02 gene
Olfr1413 1 92573125 to 92574206 1081 + protein coding gene olfactory receptor 1413
Gm28478 1 92574614 to 92574796 182 + pseudogene predicted gene 28478
Olfr1412 1 92588332 to 92589297 965 + protein coding gene olfactory receptor 1412
Gm44098 1 92589872 to 92589917 45 + pseudogene predicted gene, 44098
Gm44099 1 92595365 to 92595476 111 + pseudogene predicted gene, 44099
Olfr1411 1 92596521 to 92597492 971 + protein coding gene olfactory receptor 1411
Olfr1410 1 92607839 to 92608807 968 + protein coding gene olfactory receptor 1410
Olfr12 1 92619881 to 92621001 1120 + protein coding gene olfactory receptor 12
Cops9 1 92637145 to 92641985 4840 - protein coding gene COP9 signalosome subunit 9
Cpgi584 1 92641267 to 92642360 1093 CpG island CpG island 584
Tssr12974 1 92641942 to 92641976 34 - TSS region transcription start site region 12974
Otos 1 92644218 to 92648841 4623 - protein coding gene otospiralin
Tssr12975 1 92645724 to 92645731 7 - TSS region transcription start site region 12975
Tssr8120 1 92704996 to 92705003 7 + TSS region transcription start site region 8120
Gm29483 1 92714234 to 92717202 2968 - lincRNA gene predicted gene 29483
Tssr12976 1 92717166 to 92717181 15 - TSS region transcription start site region 12976
Tssr12977 1 92726397 to 92726418 21 - TSS region transcription start site region 12977
Tssr12978 1 92730713 to 92730722 9 - TSS region transcription start site region 12978
Tssr161 1 92730736 to 92730747 11 - TSS region transcription start site region 161
Gm36102 1 92752144 to 92761138 8994 + lncRNA gene predicted gene, 36102
Tssr8121 1 92752181 to 92752186 5 + TSS region transcription start site region 8121
Gm29482 1 92759213 to 92760480 1267 - lincRNA gene predicted gene 29482
Tssr8122 1 92774278 to 92774307 29 + TSS region transcription start site region 8122
Tssr12979 1 92774940 to 92774952 12 - TSS region transcription start site region 12979
Tssr162 1 92774998 to 92775008 10 - TSS region transcription start site region 162
Gm29481 1 92820958 to 92837896 16938 - antisense lncRNA gene predicted gene 29481
Cpgi585 1 92830761 to 92832923 2162 CpG island CpG island 585
Tssr8123 1 92831334 to 92831375 41 + TSS region transcription start site region 8123
Tssr8124 1 92831493 to 92831507 14 + TSS region transcription start site region 8124
Tssr8125 1 92831614 to 92831640 26 + TSS region transcription start site region 8125
Tssr8126 1 92831650 to 92831726 76 + TSS region transcription start site region 8126
Gpc1 1 92831686 to 92860211 28525 + protein coding gene glypican 1
Tssr8127 1 92831730 to 92831749 19 + TSS region transcription start site region 8127
Tssr8128 1 92831768 to 92831789 21 + TSS region transcription start site region 8128
Tssr8129 1 92831792 to 92831814 22 + TSS region transcription start site region 8129
Tssr8130 1 92831819 to 92831875 56 + TSS region transcription start site region 8130
Tssr12980 1 92837883 to 92837901 18 - TSS region transcription start site region 12980
Gm29480 1 92842177 to 92848771 6594 - antisense lncRNA gene predicted gene 29480
Cpgi586 1 92848465 to 92848851 386 CpG island CpG island 586
Tssr8131 1 92848583 to 92848617 34 + TSS region transcription start site region 8131
Tssr8132 1 92848625 to 92848672 47 + TSS region transcription start site region 8132
Tssr8133 1 92848708 to 92848727 19 + TSS region transcription start site region 8133
Mir149 1 92850378 to 92850443 65 + miRNA gene microRNA 149
Tssr8134 1 92855966 to 92855985 19 + TSS region transcription start site region 8134
Tssr8135 1 92858553 to 92858576 23 + TSS region transcription start site region 8135
Tssr8136 1 92859692 to 92859703 11 + TSS region transcription start site region 8136
Tssr8137 1 92859835 to 92859839 4 + TSS region transcription start site region 8137
Ankmy1 1 92860361 to 92902987 42626 - protein coding gene ankyrin repeat and MYND domain containing 1
Gm36184 1 92864579 to 92875711 11132 + lncRNA gene predicted gene, 36184
Tssr8138 1 92865178 to 92865210 32 + TSS region transcription start site region 8138
Cpgi587 1 92879262 to 92879419 157 CpG island CpG island 587
Tssr12981 1 92880218 to 92880231 13 - TSS region transcription start site region 12981
Tssr8139 1 92894898 to 92894901 3 + TSS region transcription start site region 8139
D1Mit371.1a 1 92898556 to 92898667 111 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 371.1a