Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:91652169-93212195

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193 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lore1 1 75572547 to 93013355 17440808 QTL loss of righting induced by ethanol 1
Tssr8105 1 91653410 to 91653414 4 + TSS region transcription start site region 8105
Tssr8106 1 91720881 to 91720911 30 + TSS region transcription start site region 8106
Gm29100 1 91798528 to 91802937 4409 - antisense lncRNA gene predicted gene 29100
Cpgi581 1 91800503 to 91802765 2262 CpG island CpG island 581
Tssr8107 1 91801453 to 91801487 34 + TSS region transcription start site region 8107
Twist2 1 91801461 to 91848028 46567 + protein coding gene twist basic helix-loop-helix transcription factor 2
Tssr8108 1 91801491 to 91801508 17 + TSS region transcription start site region 8108
Tssr8109 1 91801518 to 91801536 18 + TSS region transcription start site region 8109
Gm46117 1 91813046 to 91832688 19642 - lncRNA gene predicted gene, 46117
Gm29101 1 91822515 to 91823985 1470 + sense intronic lncRNA gene predicted gene 29101
Gm46242 1 91878722 to 91879666 944 - lncRNA gene predicted gene, 46242
D1Mit84 1 91909897 to 91910147 250 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 84
Gm37600 1 91916260 to 91919551 3291 + unclassified gene predicted gene, 37600
Hdac4 1 91928779 to 92195670 266891 - protein coding gene histone deacetylase 4
Tssr12955 1 91931172 to 91931176 4 - TSS region transcription start site region 12955
Gm37048 1 91975987 to 91981564 5577 + unclassified gene predicted gene, 37048
Tssr12956 1 91978486 to 91978489 3 - TSS region transcription start site region 12956
Tssr12957 1 91984655 to 91984663 8 - TSS region transcription start site region 12957
Tssr8110 1 91984781 to 91984790 9 + TSS region transcription start site region 8110
Gm26720 1 91989051 to 91992628 3577 + lincRNA gene predicted gene, 26720
Tssr12958 1 92006844 to 92006883 39 - TSS region transcription start site region 12958
Gm37036 1 92019592 to 92022097 2505 - unclassified gene predicted gene, 37036
Tssr12959 1 92048521 to 92048528 7 - TSS region transcription start site region 12959
Tssr8111 1 92048709 to 92048720 11 + TSS region transcription start site region 8111
Tssr159 1 92048749 to 92048755 6 + TSS region transcription start site region 159
Tssr12960 1 92048954 to 92049000 46 - TSS region transcription start site region 12960
Tssr12961 1 92049004 to 92049040 36 - TSS region transcription start site region 12961
Tssr160 1 92049085 to 92049093 8 - TSS region transcription start site region 160
Tssr8112 1 92049093 to 92049104 11 + TSS region transcription start site region 8112
Tssr8113 1 92049118 to 92049121 3 + TSS region transcription start site region 8113
Tssr8114 1 92049130 to 92049156 26 + TSS region transcription start site region 8114
Tssr8115 1 92052498 to 92052547 49 + TSS region transcription start site region 8115
Tssr8116 1 92058935 to 92058948 13 + TSS region transcription start site region 8116
Tssr8117 1 92058970 to 92058977 7 + TSS region transcription start site region 8117
Tssr12962 1 92113327 to 92113334 7 - TSS region transcription start site region 12962
Tssr12963 1 92114615 to 92114619 4 - TSS region transcription start site region 12963
Tssr12964 1 92126843 to 92126859 16 - TSS region transcription start site region 12964
Tssr12965 1 92127890 to 92127903 13 - TSS region transcription start site region 12965
Tssr12966 1 92127936 to 92127963 27 - TSS region transcription start site region 12966
D1Mit365 1 92129184 to 92129282 98 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 365
Cpgi582 1 92179328 to 92181252 1924 CpG island CpG island 582
Tssr12967 1 92180187 to 92180263 76 - TSS region transcription start site region 12967
Tssr12968 1 92180271 to 92180324 53 - TSS region transcription start site region 12968
Tssr12969 1 92318256 to 92318259 3 - TSS region transcription start site region 12969
Gm29099 1 92324510 to 92329888 5378 + lincRNA gene predicted gene 29099
Gm35992 1 92379557 to 92393620 14063 + lncRNA gene predicted gene, 35992
Tssr8118 1 92379624 to 92379640 16 + TSS region transcription start site region 8118
Gm7837 1 92430121 to 92430532 411 - pseudogene predicted gene 7837
Tssr12970 1 92432169 to 92432195 26 - TSS region transcription start site region 12970
Tssr8119 1 92439707 to 92439729 22 + TSS region transcription start site region 8119
Ndufa10 1 92439708 to 92473758 34050 - protein coding gene NADH:ubiquinone oxidoreductase subunit A10
Tssr12971 1 92439784 to 92439792 8 - TSS region transcription start site region 12971
Mir6900 1 92464483 to 92464542 59 - miRNA gene microRNA 6900
Cpgi583 1 92473079 to 92474220 1141 CpG island CpG island 583
Tssr12972 1 92473736 to 92473799 63 - TSS region transcription start site region 12972
Tssr12973 1 92473801 to 92473808 7 - TSS region transcription start site region 12973
Olfr1416 1 92479681 to 92480619 938 - protein coding gene olfactory receptor 1416
Olfr1415 1 92490818 to 92491753 935 - protein coding gene olfactory receptor 1415
Olfr1414 1 92511048 to 92518515 7467 - protein coding gene olfactory receptor 1414
1700054K02Rik 1 92572374 to 92572749 375 - antisense lncRNA gene RIKEN cDNA 1700054K02 gene
Olfr1413 1 92573125 to 92574206 1081 + protein coding gene olfactory receptor 1413
Gm28478 1 92574614 to 92574796 182 + pseudogene predicted gene 28478
Olfr1412 1 92588332 to 92589297 965 + protein coding gene olfactory receptor 1412
Gm44098 1 92589872 to 92589917 45 + pseudogene predicted gene, 44098
Gm44099 1 92595365 to 92595476 111 + pseudogene predicted gene, 44099
Olfr1411 1 92596521 to 92597492 971 + protein coding gene olfactory receptor 1411
Olfr1410 1 92607839 to 92608807 968 + protein coding gene olfactory receptor 1410
Olfr12 1 92619881 to 92621001 1120 + protein coding gene olfactory receptor 12
Cops9 1 92637145 to 92641985 4840 - protein coding gene COP9 signalosome subunit 9
Cpgi584 1 92641267 to 92642360 1093 CpG island CpG island 584
Tssr12974 1 92641942 to 92641976 34 - TSS region transcription start site region 12974
Otos 1 92644218 to 92648841 4623 - protein coding gene otospiralin
Tssr12975 1 92645724 to 92645731 7 - TSS region transcription start site region 12975
Tssr8120 1 92704996 to 92705003 7 + TSS region transcription start site region 8120
Gm29483 1 92714234 to 92717202 2968 - lincRNA gene predicted gene 29483
Tssr12976 1 92717166 to 92717181 15 - TSS region transcription start site region 12976
Tssr12977 1 92726397 to 92726418 21 - TSS region transcription start site region 12977
Tssr12978 1 92730713 to 92730722 9 - TSS region transcription start site region 12978
Tssr161 1 92730736 to 92730747 11 - TSS region transcription start site region 161
Gm36102 1 92752144 to 92761138 8994 + lncRNA gene predicted gene, 36102
Tssr8121 1 92752181 to 92752186 5 + TSS region transcription start site region 8121
Gm29482 1 92759213 to 92760480 1267 - lincRNA gene predicted gene 29482
Tssr8122 1 92774278 to 92774307 29 + TSS region transcription start site region 8122
Tssr12979 1 92774940 to 92774952 12 - TSS region transcription start site region 12979
Tssr162 1 92774998 to 92775008 10 - TSS region transcription start site region 162
Gm29481 1 92820958 to 92837896 16938 - antisense lncRNA gene predicted gene 29481
Cpgi585 1 92830761 to 92832923 2162 CpG island CpG island 585
Tssr8123 1 92831334 to 92831375 41 + TSS region transcription start site region 8123
Tssr8124 1 92831493 to 92831507 14 + TSS region transcription start site region 8124
Tssr8125 1 92831614 to 92831640 26 + TSS region transcription start site region 8125
Tssr8126 1 92831650 to 92831726 76 + TSS region transcription start site region 8126
Gpc1 1 92831686 to 92860211 28525 + protein coding gene glypican 1
Tssr8127 1 92831730 to 92831749 19 + TSS region transcription start site region 8127
Tssr8128 1 92831768 to 92831789 21 + TSS region transcription start site region 8128
Tssr8129 1 92831792 to 92831814 22 + TSS region transcription start site region 8129
Tssr8130 1 92831819 to 92831875 56 + TSS region transcription start site region 8130
Tssr12980 1 92837883 to 92837901 18 - TSS region transcription start site region 12980
Gm29480 1 92842177 to 92848771 6594 - antisense lncRNA gene predicted gene 29480
Cpgi586 1 92848465 to 92848851 386 CpG island CpG island 586
Tssr8131 1 92848583 to 92848617 34 + TSS region transcription start site region 8131
Tssr8132 1 92848625 to 92848672 47 + TSS region transcription start site region 8132
Tssr8133 1 92848708 to 92848727 19 + TSS region transcription start site region 8133
Mir149 1 92850378 to 92850443 65 + miRNA gene microRNA 149
Tssr8134 1 92855966 to 92855985 19 + TSS region transcription start site region 8134
Tssr8135 1 92858553 to 92858576 23 + TSS region transcription start site region 8135
Tssr8136 1 92859692 to 92859703 11 + TSS region transcription start site region 8136
Tssr8137 1 92859835 to 92859839 4 + TSS region transcription start site region 8137
Ankmy1 1 92860361 to 92902987 42626 - protein coding gene ankyrin repeat and MYND domain containing 1
Gm36184 1 92864579 to 92875711 11132 + lncRNA gene predicted gene, 36184
Tssr8138 1 92865178 to 92865210 32 + TSS region transcription start site region 8138
Cpgi587 1 92879262 to 92879419 157 CpG island CpG island 587
Tssr12981 1 92880218 to 92880231 13 - TSS region transcription start site region 12981
Tssr8139 1 92894898 to 92894901 3 + TSS region transcription start site region 8139
D1Mit371.1a 1 92898556 to 92898667 111 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 371.1a
Tssr12982 1 92902869 to 92902875 6 - TSS region transcription start site region 12982
Tssr12983 1 92902883 to 92902921 38 - TSS region transcription start site region 12983
Cpgi588 1 92902903 to 92903314 411 CpG island CpG island 588
Cpgi589 1 92906760 to 92907746 986 CpG island CpG island 589
Tssr12984 1 92906860 to 92906887 27 - TSS region transcription start site region 12984
Tssr8140 1 92906959 to 92907036 77 + TSS region transcription start site region 8140
Dusp28 1 92906981 to 92908435 1454 + protein coding gene dual specificity phosphatase 28
Tssr12985 1 92908119 to 92908130 11 - TSS region transcription start site region 12985
5033417F24Rik 1 92908378 to 92910689 2311 - antisense lncRNA gene RIKEN cDNA 5033417F24 gene
Cpgi590 1 92910408 to 92911960 1552 CpG island CpG island 590
Tssr8141 1 92910612 to 92910637 25 + TSS region transcription start site region 8141
Tssr8142 1 92910640 to 92910665 25 + TSS region transcription start site region 8142
Tssr8143 1 92910758 to 92910769 11 + TSS region transcription start site region 8143
Rnpepl1 1 92910803 to 92920585 9782 + protein coding gene arginyl aminopeptidase (aminopeptidase B)-like 1
Tssr8144 1 92910805 to 92910834 29 + TSS region transcription start site region 8144
Tssr8145 1 92910901 to 92910912 11 + TSS region transcription start site region 8145
Tssr8146 1 92911016 to 92911027 11 + TSS region transcription start site region 8146
Tssr8147 1 92912045 to 92912063 18 + TSS region transcription start site region 8147
Tssr12986 1 92919273 to 92919299 26 - TSS region transcription start site region 12986
Tssr12987 1 92919332 to 92919339 7 - TSS region transcription start site region 12987
9430060I03Rik 1 92933526 to 92950590 17064 - antisense lncRNA gene RIKEN cDNA 9430060I03 gene
Cpgi591 1 92934031 to 92935135 1104 CpG island CpG island 591
Capn10 1 92934408 to 92947948 13540 + protein coding gene calpain 10
Tssr8148 1 92934719 to 92934791 72 + TSS region transcription start site region 8148
Tssr8149 1 92934806 to 92934818 12 + TSS region transcription start site region 8149
Tssr8150 1 92935621 to 92935622 1 + TSS region transcription start site region 8150
Tssr12988 1 92950700 to 92950731 31 - TSS region transcription start site region 12988
Tssr8151 1 92950844 to 92950877 33 + TSS region transcription start site region 8151
Gpr35 1 92950865 to 92986391 35526 + protein coding gene G protein-coupled receptor 35
Tssr8152 1 92950894 to 92950903 9 + TSS region transcription start site region 8152
Tssr8153 1 92973113 to 92973127 14 + TSS region transcription start site region 8153
Tssr8154 1 92973176 to 92973192 16 + TSS region transcription start site region 8154
Tssr8155 1 92973201 to 92973213 12 + TSS region transcription start site region 8155
Tssr12989 1 92993600 to 92993603 3 - TSS region transcription start site region 12989
Tssr12990 1 92997038 to 92997045 7 - TSS region transcription start site region 12990
Tssr12991 1 92997049 to 92997072 23 - TSS region transcription start site region 12991
Tssr12992 1 92997076 to 92997084 8 - TSS region transcription start site region 12992
Gm36424 1 92997150 to 92997933 783 + lncRNA gene predicted gene, 36424
Gm18697 1 92999976 to 93000648 672 - pseudogene predicted gene, 18697
Tssr8156 1 93006328 to 93006348 20 + TSS region transcription start site region 8156
Aqp12 1 93006334 to 93012269 5935 + protein coding gene aquaporin 12
Tssr8157 1 93006349 to 93006393 44 + TSS region transcription start site region 8157
D1Mit45 1 93013187 to 93013355 168 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 45
Kif1a 1 93015455 to 93101893 86438 - protein coding gene kinesin family member 1A
Tssr12993 1 93015972 to 93016048 76 - TSS region transcription start site region 12993
Tssr12994 1 93016049 to 93016065 16 - TSS region transcription start site region 12994
Tssr12995 1 93016079 to 93016091 12 - TSS region transcription start site region 12995
Tssr12996 1 93023071 to 93023120 49 - TSS region transcription start site region 12996
Tssr12997 1 93023141 to 93023153 12 - TSS region transcription start site region 12997
Tssr12998 1 93068679 to 93068719 40 - TSS region transcription start site region 12998
Tssr12999 1 93071012 to 93071021 9 - TSS region transcription start site region 12999
Cpgi592 1 93071637 to 93071863 226 CpG island CpG island 592
Tssr13000 1 93073091 to 93073104 13 - TSS region transcription start site region 13000
Tssr13001 1 93076197 to 93076208 11 - TSS region transcription start site region 13001
Tssr13002 1 93076226 to 93076238 12 - TSS region transcription start site region 13002
Tssr13003 1 93076243 to 93076255 12 - TSS region transcription start site region 13003
Tssr13004 1 93083971 to 93083974 3 - TSS region transcription start site region 13004
Cpgi593 1 93100169 to 93102233 2064 CpG island CpG island 593
Tssr13005 1 93101810 to 93101821 11 - TSS region transcription start site region 13005
Tssr13006 1 93101825 to 93101849 24 - TSS region transcription start site region 13006
Tssr13007 1 93101854 to 93101879 25 - TSS region transcription start site region 13007
Gm36472 1 93114811 to 93115895 1084 + lncRNA gene predicted gene, 36472
Gm28086 1 93122931 to 93124103 1172 - lincRNA gene predicted gene 28086
Agxt 1 93135240 to 93145421 10181 + protein coding gene alanine-glyoxylate aminotransferase
Tssr8158 1 93135244 to 93135256 12 + TSS region transcription start site region 8158
Tssr8159 1 93135310 to 93135326 16 + TSS region transcription start site region 8159
Tssr8160 1 93135332 to 93135339 7 + TSS region transcription start site region 8160
Mab21l4 1 93151349 to 93160948 9599 - protein coding gene mab-21-like 4
Tssr13008 1 93160192 to 93160203 11 - TSS region transcription start site region 13008
Tssr13009 1 93160234 to 93160245 11 - TSS region transcription start site region 13009
Tssr13010 1 93160267 to 93160285 18 - TSS region transcription start site region 13010
Tssr13011 1 93160839 to 93160851 12 - TSS region transcription start site region 13011
Tssr13012 1 93160907 to 93160955 48 - TSS region transcription start site region 13012
Tssr8161 1 93168598 to 93168619 21 + TSS region transcription start site region 8161
Crocc2 1 93168725 to 93231072 62347 + protein coding gene ciliary rootlet coiled-coil, rootletin family member 2
Cpgi594 1 93176410 to 93177064 654 CpG island CpG island 594
Tssr8162 1 93211722 to 93211724 2 + TSS region transcription start site region 8162
Bwq7 1 124570059 to 93013187 -31556872 QTL body weight, QTL 7