Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:9158277-10338320

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153 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sntg1 1 8361475 to 9299878 938403 - protein coding gene syntrophin, gamma 1
Gm37629 1 9191067 to 9192116 1049 - unclassified gene predicted gene, 37629
Gm38008 1 9258617 to 9259134 517 - pseudogene predicted gene, 38008
Gm37143 1 9286922 to 9290180 3258 + unclassified gene predicted gene, 37143
Tssr10915 1 9298499 to 9298512 13 - TSS region transcription start site region 10915
Cpgi22 1 9298685 to 9300179 1494 CpG island CpG island 22
Tssr10916 1 9298821 to 9298878 57 - TSS region transcription start site region 10916
Tssr10917 1 9299251 to 9299306 55 - TSS region transcription start site region 10917
Tssr10918 1 9299669 to 9299689 20 - TSS region transcription start site region 10918
Tssr5892 1 9377649 to 9377653 4 + TSS region transcription start site region 5892
Gm6187 1 9396668 to 9398567 1899 - pseudogene predicted gene 6187
Gm30719 1 9437054 to 9438070 1016 + lncRNA gene predicted gene, 30719
Gm18299 1 9439741 to 9440376 635 - pseudogene predicted gene, 18299
Gm7512 1 9450579 to 9451748 1169 + pseudogene predicted gene 7512
Tssr5893 1 9450588 to 9450594 6 + TSS region transcription start site region 5893
Gm24765 1 9458670 to 9458772 102 + snRNA gene predicted gene, 24765
Gm18300 1 9499359 to 9501514 2155 - pseudogene predicted gene, 18300
Cpgi23 1 9545047 to 9546239 1192 CpG island CpG island 23
Tssr5894 1 9545379 to 9545388 9 + TSS region transcription start site region 5894
Tssr5895 1 9545397 to 9545479 82 + TSS region transcription start site region 5895
Rrs1 1 9545408 to 9547455 2047 + protein coding gene ribosome biogenesis regulator 1
Tssr5896 1 9545489 to 9545495 6 + TSS region transcription start site region 5896
Tssr5897 1 9545921 to 9545988 67 + TSS region transcription start site region 5897
Adhfe1 1 9547935 to 9577968 30033 + protein coding gene alcohol dehydrogenase, iron containing, 1
Tssr5898 1 9548049 to 9548101 52 + TSS region transcription start site region 5898
Tssr5899 1 9548114 to 9548125 11 + TSS region transcription start site region 5899
2610203C22Rik 1 9560832 to 9631092 70260 - lncRNA gene RIKEN cDNA 2610203C22 gene
Gm6161 1 9574548 to 9575649 1101 + pseudogene predicted gene 6161
Tssr5900 1 9601135 to 9601144 9 + TSS region transcription start site region 5900
Tssr5901 1 9601163 to 9601256 93 + TSS region transcription start site region 5901
Tssr5902 1 9601263 to 9601310 47 + TSS region transcription start site region 5902
Vxn 1 9601267 to 9627142 25875 + protein coding gene vexin
Tssr5903 1 9601311 to 9601325 14 + TSS region transcription start site region 5903
Tssr5904 1 9601336 to 9601348 12 + TSS region transcription start site region 5904
Tssr5905 1 9601456 to 9601487 31 + TSS region transcription start site region 5905
Tssr5906 1 9601491 to 9601504 13 + TSS region transcription start site region 5906
Tssr10919 1 9631101 to 9631116 15 - TSS region transcription start site region 10919
Tssr10920 1 9631149 to 9631173 24 - TSS region transcription start site region 10920
Tssr10921 1 9631175 to 9631189 14 - TSS region transcription start site region 10921
Tssr10922 1 9636888 to 9636901 13 - TSS region transcription start site region 10922
Gm29520 1 9639255 to 9640582 1327 - lincRNA gene predicted gene 29520
Cpgi24 1 9649309 to 9649468 159 CpG island CpG island 24
Mybl1 1 9667415 to 9700209 32794 - protein coding gene myeloblastosis oncogene-like 1
Tssr10923 1 9667700 to 9667701 1 - TSS region transcription start site region 10923
Tssr10924 1 9682206 to 9682208 2 - TSS region transcription start site region 10924
Tssr10925 1 9685535 to 9685539 4 - TSS region transcription start site region 10925
Tssr10926 1 9696863 to 9696874 11 - TSS region transcription start site region 10926
Cpgi25 1 9699664 to 9701102 1438 CpG island CpG island 25
Tssr10927 1 9700317 to 9700329 12 - TSS region transcription start site region 10927
Tssr10928 1 9700343 to 9700386 43 - TSS region transcription start site region 10928
Tssr10929 1 9700393 to 9700412 19 - TSS region transcription start site region 10929
Vcpip1 1 9718622 to 9748382 29760 - protein coding gene valosin containing protein (p97)/p47 complex interacting protein 1
Tssr10930 1 9721364 to 9721398 34 - TSS region transcription start site region 10930
Tssr10931 1 9721404 to 9721416 12 - TSS region transcription start site region 10931
Tssr10932 1 9721455 to 9721503 48 - TSS region transcription start site region 10932
Tssr10933 1 9725930 to 9725934 4 - TSS region transcription start site region 10933
Tssr10934 1 9736594 to 9736597 3 - TSS region transcription start site region 10934
Tssr10935 1 9745571 to 9745598 27 - TSS region transcription start site region 10935
Tssr10936 1 9746493 to 9746513 20 - TSS region transcription start site region 10936
Cpgi26 1 9747453 to 9748748 1295 CpG island CpG island 26
1700034P13Rik 1 9747648 to 9771256 23608 + antisense lncRNA gene RIKEN cDNA 1700034P13 gene
Tssr10937 1 9748227 to 9748243 16 - TSS region transcription start site region 10937
Tssr10938 1 9748247 to 9748272 25 - TSS region transcription start site region 10938
Tssr10939 1 9748277 to 9748320 43 - TSS region transcription start site region 10939
Tssr10940 1 9748330 to 9748353 23 - TSS region transcription start site region 10940
Tssr10941 1 9748355 to 9748367 12 - TSS region transcription start site region 10941
Tssr10942 1 9748376 to 9748451 75 - TSS region transcription start site region 10942
D1Mit296 1 9749730 to 9749873 143 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 296
D1Mit58 1 9757119 to 9757372 253 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 58
D1Mit58.2 1 9757246 to 9757363 117 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 58.2
Tssr5907 1 9759104 to 9759112 8 + TSS region transcription start site region 5907
Gm39590 1 9775558 to 9791319 15761 + lncRNA gene predicted gene, 39590
Tssr5908 1 9783723 to 9783735 12 + TSS region transcription start site region 5908
Tssr5909 1 9788396 to 9788407 11 + TSS region transcription start site region 5909
Tssr5910 1 9788409 to 9788420 11 + TSS region transcription start site region 5910
Cpgi27 1 9797682 to 9798751 1069 CpG island CpG island 27
Tssr5911 1 9797795 to 9797809 14 + TSS region transcription start site region 5911
Tssr5912 1 9797812 to 9797823 11 + TSS region transcription start site region 5912
Tssr5913 1 9797986 to 9798040 54 + TSS region transcription start site region 5913
Sgk3 1 9798107 to 9900845 102738 + protein coding gene serum/glucocorticoid regulated kinase 3
Tssr5914 1 9798123 to 9798216 93 + TSS region transcription start site region 5914
Tssr10943 1 9798985 to 9798996 11 - TSS region transcription start site region 10943
Tssr5915 1 9799172 to 9799220 48 + TSS region transcription start site region 5915
Tssr10944 1 9799351 to 9799373 22 - TSS region transcription start site region 10944
Gm6195 1 9802197 to 9802553 356 - pseudogene predicted pseudogene 6195
Tssr5916 1 9807006 to 9807014 8 + TSS region transcription start site region 5916
Gm22607 1 9834498 to 9834602 104 - snRNA gene predicted gene, 22607
Tssr5917 1 9836048 to 9836052 4 + TSS region transcription start site region 5917
Cpgi28 1 9848038 to 9848775 737 CpG island CpG island 28
Tssr5918 1 9848270 to 9848285 15 + TSS region transcription start site region 5918
Tssr5919 1 9848294 to 9848362 68 + TSS region transcription start site region 5919
Tssr5920 1 9848375 to 9848398 23 + TSS region transcription start site region 5920
Gm2352 1 9901944 to 9902558 614 + pseudogene predicted gene 2352
Mcmdc2 1 9908638 to 9942085 33447 + protein coding gene minichromosome maintenance domain containing 2
Tssr5921 1 9908654 to 9908669 15 + TSS region transcription start site region 5921
Tssr5922 1 9908679 to 9908686 7 + TSS region transcription start site region 5922
Tssr5923 1 9932092 to 9932107 15 + TSS region transcription start site region 5923
Snhg6 1 9942025 to 9944118 2093 - lincRNA gene small nucleolar RNA host gene 6
Tssr10945 1 9942155 to 9942167 12 - TSS region transcription start site region 10945
Snord87 1 9942470 to 9942543 73 - snoRNA gene small nucleolar RNA, C/D box 87
Tssr10946 1 9942537 to 9942550 13 - TSS region transcription start site region 10946
Tssr10947 1 9943590 to 9943608 18 - TSS region transcription start site region 10947
Cpgi29 1 9943688 to 9944485 797 CpG island CpG island 29
Tssr10948 1 9944087 to 9944090 3 - TSS region transcription start site region 10948
Tssr10949 1 9944104 to 9944127 23 - TSS region transcription start site region 10949
Tcf24 1 9960163 to 9967932 7769 - protein coding gene transcription factor 24
Cpgi30 1 9966928 to 9968423 1495 CpG island CpG island 30
E330040D14Rik 1 9967314 to 9968687 1373 + unclassified gene RIKEN cDNA E330040D14 gene
Tssr10950 1 9967805 to 9967815 10 - TSS region transcription start site region 10950
Gm15818 1 9982387 to 9992366 9979 + antisense lncRNA gene predicted gene 15818
Tssr10951 1 9991919 to 9991930 11 - TSS region transcription start site region 10951
Tssr10952 1 9991936 to 9991949 13 - TSS region transcription start site region 10952
Tssr10953 1 10009098 to 10009160 62 - TSS region transcription start site region 10953
Ppp1r42 1 10009136 to 9968624 -40512 - protein coding gene protein phosphatase 1, regulatory subunit 42
Tssr10954 1 10009161 to 10009166 5 - TSS region transcription start site region 10954
Gm24674 1 10009814 to 10009917 103 - snRNA gene predicted gene, 24674
Cops5 1 10024600 to 10038159 13559 - protein coding gene COP9 signalosome subunit 5
Cpgi31 1 10037555 to 10038443 888 CpG island CpG island 31
Tssr10955 1 10037883 to 10037894 11 - TSS region transcription start site region 10955
Tssr10956 1 10037922 to 10037931 9 - TSS region transcription start site region 10956
Tssr10957 1 10037932 to 10037968 36 - TSS region transcription start site region 10957
Tssr10958 1 10038106 to 10038169 63 - TSS region transcription start site region 10958
Cspp1 1 10038118 to 10136771 98653 + protein coding gene centrosome and spindle pole associated protein 1
Tssr4 1 10038208 to 10038228 20 + TSS region transcription start site region 4
Cpgi32 1 10039521 to 10040326 805 CpG island CpG island 32
Tssr5924 1 10039762 to 10039792 30 + TSS region transcription start site region 5924
Tssr5925 1 10039797 to 10039819 22 + TSS region transcription start site region 5925
Tssr5926 1 10039824 to 10039845 21 + TSS region transcription start site region 5926
Tssr10959 1 10040007 to 10040017 10 - TSS region transcription start site region 10959
Tssr5927 1 10056922 to 10056926 4 + TSS region transcription start site region 5927
1700047N06Rik 1 10057025 to 10057944 919 - unclassified gene RIKEN cDNA 1700047N06 gene
Tssr10960 1 10057921 to 10057945 24 - TSS region transcription start site region 10960
Tssr5928 1 10059260 to 10059266 6 + TSS region transcription start site region 5928
Arfgef1 1 10137571 to 10232670 95099 - protein coding gene ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)
Tssr10961 1 10162224 to 10162247 23 - TSS region transcription start site region 10961
Gm26348 1 10166539 to 10166778 239 + unclassified non-coding RNA gene predicted gene, 26348
Tssr10962 1 10180945 to 10180957 12 - TSS region transcription start site region 10962
Gm37569 1 10197081 to 10198802 1721 - unclassified gene predicted gene, 37569
Tssr10963 1 10214245 to 10214258 13 - TSS region transcription start site region 10963
Tssr10964 1 10230771 to 10230775 4 - TSS region transcription start site region 10964
Cpgi33 1 10231986 to 10233512 1526 CpG island CpG island 33
Tssr5 1 10232933 to 10232938 5 - TSS region transcription start site region 5
Tssr10965 1 10232968 to 10233000 32 - TSS region transcription start site region 10965
Tssr10966 1 10233007 to 10233020 13 - TSS region transcription start site region 10966
Tssr10967 1 10233047 to 10233093 46 - TSS region transcription start site region 10967
Tssr6 1 10233047 to 10233056 9 + TSS region transcription start site region 6
Tssr10968 1 10233111 to 10233122 11 - TSS region transcription start site region 10968
Tssr5929 1 10260328 to 10260334 6 + TSS region transcription start site region 5929
Tssr7 1 10261684 to 10261719 35 + TSS region transcription start site region 7
Tssr5930 1 10284900 to 10284926 26 + TSS region transcription start site region 5930
Tssr8 1 10315270 to 10315286 16 + TSS region transcription start site region 8
Cpa6 1 10324720 to 10719945 395225 - protein coding gene carboxypeptidase A6
Tssr9 1 10335550 to 10335554 4 + TSS region transcription start site region 9