Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:91053733-92023772

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159 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrrfip1 1 90998737 to 91128944 130207 + protein coding gene leucine rich repeat (in FLII) interacting protein 1
Tssr12929 1 91053846 to 91053850 4 - TSS region transcription start site region 12929
Tssr8037 1 91053973 to 91053992 19 + TSS region transcription start site region 8037
Tssr12930 1 91056492 to 91056508 16 - TSS region transcription start site region 12930
Tssr8038 1 91056589 to 91056597 8 + TSS region transcription start site region 8038
Tssr8039 1 91056622 to 91056636 14 + TSS region transcription start site region 8039
Tssr8040 1 91056647 to 91056668 21 + TSS region transcription start site region 8040
Tssr8041 1 91056673 to 91056696 23 + TSS region transcription start site region 8041
Tssr12931 1 91057710 to 91057734 24 - TSS region transcription start site region 12931
Tssr8042 1 91057888 to 91057898 10 + TSS region transcription start site region 8042
Tssr8043 1 91057933 to 91057943 10 + TSS region transcription start site region 8043
Tssr12932 1 91062515 to 91062527 12 - TSS region transcription start site region 12932
Tssr8044 1 91062738 to 91062751 13 + TSS region transcription start site region 8044
Tssr12933 1 91063239 to 91063256 17 - TSS region transcription start site region 12933
Tssr8045 1 91068547 to 91068574 27 + TSS region transcription start site region 8045
Tssr8046 1 91073700 to 91073705 5 + TSS region transcription start site region 8046
Tssr8047 1 91083483 to 91083487 4 + TSS region transcription start site region 8047
Tssr12934 1 91091626 to 91091635 9 - TSS region transcription start site region 12934
Tssr12935 1 91091639 to 91091657 18 - TSS region transcription start site region 12935
Tssr8048 1 91093524 to 91093536 12 + TSS region transcription start site region 8048
Tssr8049 1 91093561 to 91093568 7 + TSS region transcription start site region 8049
Tssr8050 1 91107307 to 91107318 11 + TSS region transcription start site region 8050
Tssr8051 1 91114794 to 91114806 12 + TSS region transcription start site region 8051
Tssr8052 1 91115293 to 91115310 17 + TSS region transcription start site region 8052
Tssr8053 1 91116662 to 91116687 25 + TSS region transcription start site region 8053
Tssr8054 1 91121734 to 91121747 13 + TSS region transcription start site region 8054
Cpgi569 1 91144846 to 91145170 324 CpG island CpG island 569
Tssr8055 1 91144970 to 91144988 18 + TSS region transcription start site region 8055
Tssr8056 1 91145057 to 91145101 44 + TSS region transcription start site region 8056
Rbm44 1 91145089 to 91170795 25706 + protein coding gene RNA binding motif protein 44
Tssr8057 1 91145104 to 91145115 11 + TSS region transcription start site region 8057
Gm35443 1 91147451 to 91147745 294 + pseudogene predicted gene, 35443
Gm7776 1 91171429 to 91172148 719 - pseudogene predicted gene 7776
Tssr8058 1 91177719 to 91177723 4 + TSS region transcription start site region 8058
Cpgi570 1 91179621 to 91180434 813 CpG island CpG island 570
Ramp1 1 91179822 to 91225196 45374 + protein coding gene receptor (calcitonin) activity modifying protein 1
Tssr8059 1 91180004 to 91180024 20 + TSS region transcription start site region 8059
Tssr8060 1 91180025 to 91180055 30 + TSS region transcription start site region 8060
Tssr8061 1 91180058 to 91180067 9 + TSS region transcription start site region 8061
Tssr12936 1 91183476 to 91183485 9 - TSS region transcription start site region 12936
Tssr8062 1 91214231 to 91214258 27 + TSS region transcription start site region 8062
Tssr8063 1 91214524 to 91214538 14 + TSS region transcription start site region 8063
Tssr8064 1 91214555 to 91214579 24 + TSS region transcription start site region 8064
Tssr12937 1 91216951 to 91216959 8 - TSS region transcription start site region 12937
1810073J14Rik 1 91238183 to 91241353 3170 unclassified gene RIKEN cDNA 1810073J14 gene
Ube2f 1 91249690 to 91286520 36830 + protein coding gene ubiquitin-conjugating enzyme E2F (putative)
Cpgi571 1 91249896 to 91251091 1195 CpG island CpG island 571
Tssr12938 1 91250040 to 91250075 35 - TSS region transcription start site region 12938
Tssr8065 1 91250193 to 91250216 23 + TSS region transcription start site region 8065
Tssr8066 1 91250297 to 91250310 13 + TSS region transcription start site region 8066
Tssr8067 1 91250311 to 91250380 69 + TSS region transcription start site region 8067
Tssr8068 1 91250482 to 91250508 26 + TSS region transcription start site region 8068
Tssr8069 1 91250575 to 91250586 11 + TSS region transcription start site region 8069
Tssr12939 1 91251372 to 91251409 37 - TSS region transcription start site region 12939
Tssr154 1 91296003 to 91296011 8 + TSS region transcription start site region 154
Gm7785 1 91296045 to 91296936 891 + pseudogene predicted gene 7785
Gm26683 1 91297203 to 91304405 7202 - lincRNA gene predicted gene, 26683
Cpgi572 1 91297889 to 91298756 867 CpG island CpG island 572
Tssr8070 1 91298334 to 91298353 19 + TSS region transcription start site region 8070
Scly 1 91298338 to 91321075 22737 + protein coding gene selenocysteine lyase
Tssr8071 1 91298354 to 91298391 37 + TSS region transcription start site region 8071
Gm17090 1 91305092 to 91321101 16009 - antisense lncRNA gene predicted gene 17090
Tssr8072 1 91306171 to 91306174 3 + TSS region transcription start site region 8072
Tssr8073 1 91308618 to 91308627 9 + TSS region transcription start site region 8073
Tssr8074 1 91308633 to 91308642 9 + TSS region transcription start site region 8074
Tssr8075 1 91320218 to 91320232 14 + TSS region transcription start site region 8075
Espnl 1 91322075 to 91348303 26228 + protein coding gene espin-like
Tssr8076 1 91322105 to 91322114 9 + TSS region transcription start site region 8076
Tssr8077 1 91322117 to 91322128 11 + TSS region transcription start site region 8077
Tssr8078 1 91338651 to 91338672 21 + TSS region transcription start site region 8078
Tssr8079 1 91338676 to 91338687 11 + TSS region transcription start site region 8079
Cpgi573 1 91344449 to 91345897 1448 CpG island CpG island 573
Tssr8080 1 91351029 to 91351100 71 + TSS region transcription start site region 8080
Klhl30 1 91351073 to 91362404 11331 + protein coding gene kelch-like 30
Cpgi574 1 91365950 to 91367087 1137 CpG island CpG island 574
Tssr8081 1 91366412 to 91366433 21 + TSS region transcription start site region 8081
Erfe 1 91366430 to 91374217 7787 + protein coding gene erythroferrone
Tssr8082 1 91366445 to 91366468 23 + TSS region transcription start site region 8082
Ilkap 1 91373861 to 91398815 24954 - protein coding gene integrin-linked kinase-associated serine/threonine phosphatase 2C
Cpgi575 1 91397963 to 91399154 1191 CpG island CpG island 575
Tssr12940 1 91398713 to 91398724 11 - TSS region transcription start site region 12940
Tssr12941 1 91398726 to 91398765 39 - TSS region transcription start site region 12941
Tssr12942 1 91398768 to 91398837 69 - TSS region transcription start site region 12942
Tssr12943 1 91403282 to 91403286 4 - TSS region transcription start site region 12943
1700020N18Rik 1 91404879 to 91406029 1150 - lincRNA gene RIKEN cDNA 1700020N18 gene
Cpgi576 1 91405855 to 91406191 336 CpG island CpG island 576
Tssr12944 1 91406021 to 91406040 19 - TSS region transcription start site region 12944
Tssr12945 1 91406041 to 91406072 31 - TSS region transcription start site region 12945
Tssr12946 1 91406077 to 91406083 6 - TSS region transcription start site region 12946
Hes6 1 91411482 to 91413877 2395 - protein coding gene hairy and enhancer of split 6
Cpgi577 1 91411982 to 91414561 2579 CpG island CpG island 577
Tssr12947 1 91413163 to 91413234 71 - TSS region transcription start site region 12947
Tssr8083 1 91413382 to 91413413 31 + TSS region transcription start site region 8083
Tssr8084 1 91413423 to 91413439 16 + TSS region transcription start site region 8084
Per2 1 91415982 to 91459324 43342 - protein coding gene period circadian clock 2
Tssr155 1 91437956 to 91437983 27 + TSS region transcription start site region 155
Tssr8085 1 91442877 to 91442905 28 + TSS region transcription start site region 8085
Gm35591 1 91446118 to 91453750 7632 + lncRNA gene predicted gene, 35591
Tssr156 1 91456405 to 91456409 4 - TSS region transcription start site region 156
Tssr12948 1 91456462 to 91456473 11 - TSS region transcription start site region 12948
Tssr12949 1 91456530 to 91456550 20 - TSS region transcription start site region 12949
Tssr8086 1 91456775 to 91456789 14 + TSS region transcription start site region 8086
Tssr8087 1 91456805 to 91456812 7 + TSS region transcription start site region 8087
Tssr12950 1 91458241 to 91458251 10 - TSS region transcription start site region 12950
Tssr12951 1 91458273 to 91458289 16 - TSS region transcription start site region 12951
Tssr8088 1 91458557 to 91458563 6 + TSS region transcription start site region 8088
Cpgi578 1 91458577 to 91459921 1344 CpG island CpG island 578
Tssr12952 1 91459254 to 91459336 82 - TSS region transcription start site region 12952
Tssr157 1 91459471 to 91459489 18 + TSS region transcription start site region 157
Gm28381 1 91469906 to 91470098 192 - pseudogene predicted gene 28381
Tssr8089 1 91483017 to 91483030 13 + TSS region transcription start site region 8089
Gm28382 1 91483024 to 91484774 1750 + lincRNA gene predicted gene 28382
Gm19085 1 91487729 to 91490009 2280 - pseudogene predicted gene, 19085
Cpgi579 1 91494201 to 91495399 1198 CpG island CpG island 579
Tssr8090 1 91494596 to 91494624 28 + TSS region transcription start site region 8090
Tssr8091 1 91494631 to 91494698 67 + TSS region transcription start site region 8091
Traf3ip1 1 91494647 to 91529307 34660 + protein coding gene TRAF3 interacting protein 1
Tssr8092 1 91494706 to 91494721 15 + TSS region transcription start site region 8092
Tssr8093 1 91500802 to 91500859 57 + TSS region transcription start site region 8093
Tssr8094 1 91528032 to 91528036 4 + TSS region transcription start site region 8094
Tssr8095 1 91538733 to 91538772 39 + TSS region transcription start site region 8095
Cpgi580 1 91539765 to 91541414 1649 CpG island CpG island 580
Tssr8096 1 91540006 to 91540009 3 + TSS region transcription start site region 8096
Tssr8097 1 91540011 to 91540020 9 + TSS region transcription start site region 8097
Tssr8098 1 91540025 to 91540051 26 + TSS region transcription start site region 8098
Tssr8099 1 91540054 to 91540057 3 + TSS region transcription start site region 8099
Tssr12953 1 91540375 to 91540393 18 - TSS region transcription start site region 12953
Asb1 1 91540544 to 91559589 19045 + protein coding gene ankyrin repeat and SOCS box-containing 1
Tssr8100 1 91540553 to 91540578 25 + TSS region transcription start site region 8100
Tssr8101 1 91540687 to 91540761 74 + TSS region transcription start site region 8101
Tssr8102 1 91541044 to 91541049 5 + TSS region transcription start site region 8102
Tssr8103 1 91541074 to 91541089 15 + TSS region transcription start site region 8103
Tssr158 1 91611356 to 91611367 11 + TSS region transcription start site region 158
Gm28380 1 91611406 to 91624500 13094 + lincRNA gene predicted gene 28380
Tssr8104 1 91626353 to 91626393 40 + TSS region transcription start site region 8104
Tssr12954 1 91650699 to 91650738 39 - TSS region transcription start site region 12954
Tssr8105 1 91653410 to 91653414 4 + TSS region transcription start site region 8105
Tssr8106 1 91720881 to 91720911 30 + TSS region transcription start site region 8106
Gm29100 1 91798528 to 91802937 4409 - antisense lncRNA gene predicted gene 29100
Cpgi581 1 91800503 to 91802765 2262 CpG island CpG island 581
Tssr8107 1 91801453 to 91801487 34 + TSS region transcription start site region 8107
Twist2 1 91801461 to 91848028 46567 + protein coding gene twist basic helix-loop-helix transcription factor 2
Tssr8108 1 91801491 to 91801508 17 + TSS region transcription start site region 8108
Tssr8109 1 91801518 to 91801536 18 + TSS region transcription start site region 8109
Gm46117 1 91813046 to 91832688 19642 - lncRNA gene predicted gene, 46117
Gm29101 1 91822515 to 91823985 1470 + sense intronic lncRNA gene predicted gene 29101
Gm46242 1 91878722 to 91879666 944 - lncRNA gene predicted gene, 46242
D1Mit84 1 91909897 to 91910147 250 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 84
Gm37600 1 91916260 to 91919551 3291 + unclassified gene predicted gene, 37600
Hdac4 1 91928779 to 92195670 266891 - protein coding gene histone deacetylase 4
Tssr12955 1 91931172 to 91931176 4 - TSS region transcription start site region 12955
Gm37048 1 91975987 to 91981564 5577 + unclassified gene predicted gene, 37048
Tssr12956 1 91978486 to 91978489 3 - TSS region transcription start site region 12956
Tssr12957 1 91984655 to 91984663 8 - TSS region transcription start site region 12957
Tssr8110 1 91984781 to 91984790 9 + TSS region transcription start site region 8110
Gm26720 1 91989051 to 91992628 3577 + lincRNA gene predicted gene, 26720
Tssr12958 1 92006844 to 92006883 39 - TSS region transcription start site region 12958
Gm37036 1 92019592 to 92022097 2505 - unclassified gene predicted gene, 37036
Reb1 1 100485942 to 91540544 -8945398 QTL repetitive behavior 1