Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:90188460-91018511

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi562 1 90203858 to 90204132 274 CpG island CpG island 562
Ackr3 1 90203980 to 90215724 11744 + protein coding gene atypical chemokine receptor 3
Tssr8015 1 90203995 to 90204012 17 + TSS region transcription start site region 8015
Cpgi563 1 90222239 to 90222391 152 CpG island CpG island 563
Gm38277 1 90227160 to 90228526 1366 - unclassified gene predicted gene, 38277
Gm34930 1 90247265 to 90261655 14390 + lncRNA gene predicted gene, 34930
Tssr8016 1 90252721 to 90252726 5 + TSS region transcription start site region 8016
Gm28721 1 90255276 to 90260120 4844 - lincRNA gene predicted gene 28721
2700003A03Rik 1 90270711 to 90290770 20059 + lncRNA gene RIKEN cDNA 2700003A03 gene
Gm28723 1 90280458 to 90283912 3454 + lincRNA gene predicted gene 28723
Gm27648 1 90327312 to 90327418 106 + rRNA gene predicted gene, 27648
Gm34992 1 90337731 to 90451763 114032 + lncRNA gene predicted gene, 34992
Gm28722 1 90453394 to 90454501 1107 - lincRNA gene predicted gene 28722
Tssr8017 1 90519792 to 90519824 32 + TSS region transcription start site region 8017
Gm35048 1 90520496 to 90523297 2801 + lncRNA gene predicted gene, 35048
Gm35141 1 90538995 to 90547781 8786 - lncRNA gene predicted gene, 35141
Gm41917 1 90548009 to 90582787 34778 - lncRNA gene predicted gene, 41917
Tssr8018 1 90564153 to 90564195 42 + TSS region transcription start site region 8018
Gm35192 1 90582883 to 90583292 409 + lncRNA gene predicted gene, 35192
Cpgi564 1 90603117 to 90603854 737 CpG island CpG island 564
Cops8 1 90603425 to 90613341 9916 + protein coding gene COP9 signalosome subunit 8
Tssr8019 1 90603460 to 90603511 51 + TSS region transcription start site region 8019
Gm35242 1 90649078 to 90655018 5940 + lncRNA gene predicted gene, 35242
Gm9991 1 90675161 to 90679793 4632 + lincRNA gene predicted gene 9991
Gm35332 1 90686845 to 90703890 17045 - lncRNA gene predicted gene, 35332
D1Mit10 1 90687970 to 90688108 138 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 10
Mssq1 1 90687970 to 90688108 138 QTL mandible size and shape QTL 1
Hrq3 1 90687970 to 90688108 138 QTL heart rate QTL 3
4931428A05Rik 1 90758609 to 90760488 1879 unclassified gene RIKEN cDNA 4931428A05 gene
Gm41918 1 90758762 to 90764014 5252 - lncRNA gene predicted gene, 41918
Col6a3 1 90766860 to 90843971 77111 - protein coding gene collagen, type VI, alpha 3
Tssr12913 1 90775675 to 90775686 11 - TSS region transcription start site region 12913
Tssr12914 1 90775731 to 90775744 13 - TSS region transcription start site region 12914
Tssr12915 1 90775772 to 90775777 5 - TSS region transcription start site region 12915
Tssr12916 1 90780359 to 90780361 2 - TSS region transcription start site region 12916
Tssr12917 1 90822421 to 90822424 3 - TSS region transcription start site region 12917
Gm36970 1 90837275 to 90839133 1858 - unclassified gene predicted gene, 36970
Tssr12918 1 90843916 to 90843983 67 - TSS region transcription start site region 12918
Tssr12919 1 90843992 to 90844004 12 - TSS region transcription start site region 12919
Tssr8020 1 90857987 to 90858000 13 + TSS region transcription start site region 8020
Tssr8021 1 90858006 to 90858018 12 + TSS region transcription start site region 8021
4930474B08Rik 1 90870583 to 90871419 836 - unclassified gene RIKEN cDNA 4930474B08 gene
Gm35381 1 90887867 to 90909237 21370 - lncRNA gene predicted gene, 35381
Cpgi565 1 90914861 to 90915153 292 CpG island CpG island 565
Tssr8022 1 90915064 to 90915114 50 + TSS region transcription start site region 8022
Mlph 1 90915085 to 90951142 36057 + protein coding gene melanophilin
Tssr8023 1 90915115 to 90915135 20 + TSS region transcription start site region 8023
Cpgi566 1 90928208 to 90928379 171 CpG island CpG island 566
Prlh 1 90953108 to 90954027 919 + protein coding gene prolactin releasing hormone
Rab17 1 90958133 to 90969661 11528 - protein coding gene RAB17, member RAS oncogene family
Tssr12920 1 90969383 to 90969402 19 - TSS region transcription start site region 12920
Tssr12921 1 90969429 to 90969471 42 - TSS region transcription start site region 12921
Tssr12922 1 90969607 to 90969631 24 - TSS region transcription start site region 12922
Gm28199 1 90974459 to 90975260 801 - lincRNA gene predicted gene 28199
Cpgi567 1 90998268 to 90999491 1223 CpG island CpG island 567
Tssr8024 1 90998722 to 90998796 74 + TSS region transcription start site region 8024
Lrrfip1 1 90998737 to 91128944 130207 + protein coding gene leucine rich repeat (in FLII) interacting protein 1