Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:90138394-90769501

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Iqca 1 90042132 to 90153401 111269 - protein coding gene IQ motif containing with AAA domain
Tssr12911 1 90153396 to 90153406 10 - TSS region transcription start site region 12911
Tssr12912 1 90153426 to 90153442 16 - TSS region transcription start site region 12912
4930434B07Rik 1 90153628 to 90159462 5834 + lincRNA gene RIKEN cDNA 4930434B07 gene
Cpgi562 1 90203858 to 90204132 274 CpG island CpG island 562
Ackr3 1 90203980 to 90215724 11744 + protein coding gene atypical chemokine receptor 3
Tssr8015 1 90203995 to 90204012 17 + TSS region transcription start site region 8015
Cpgi563 1 90222239 to 90222391 152 CpG island CpG island 563
Gm38277 1 90227160 to 90228526 1366 - unclassified gene predicted gene, 38277
Gm34930 1 90247265 to 90261655 14390 + lncRNA gene predicted gene, 34930
Tssr8016 1 90252721 to 90252726 5 + TSS region transcription start site region 8016
Gm28721 1 90255276 to 90260120 4844 - lincRNA gene predicted gene 28721
2700003A03Rik 1 90270711 to 90290770 20059 + lncRNA gene RIKEN cDNA 2700003A03 gene
Gm28723 1 90280458 to 90283912 3454 + lincRNA gene predicted gene 28723
Gm27648 1 90327312 to 90327418 106 + rRNA gene predicted gene, 27648
Gm34992 1 90337731 to 90451763 114032 + lncRNA gene predicted gene, 34992
Gm28722 1 90453394 to 90454501 1107 - lincRNA gene predicted gene 28722
Tssr8017 1 90519792 to 90519824 32 + TSS region transcription start site region 8017
Gm35048 1 90520496 to 90523297 2801 + lncRNA gene predicted gene, 35048
Gm35141 1 90538995 to 90547781 8786 - lncRNA gene predicted gene, 35141
Gm41917 1 90548009 to 90582787 34778 - lncRNA gene predicted gene, 41917
Tssr8018 1 90564153 to 90564195 42 + TSS region transcription start site region 8018
Gm35192 1 90582883 to 90583292 409 + lncRNA gene predicted gene, 35192
Cpgi564 1 90603117 to 90603854 737 CpG island CpG island 564
Cops8 1 90603425 to 90613341 9916 + protein coding gene COP9 signalosome subunit 8
Tssr8019 1 90603460 to 90603511 51 + TSS region transcription start site region 8019
Gm35242 1 90649078 to 90655018 5940 + lncRNA gene predicted gene, 35242
Gm9991 1 90675161 to 90679793 4632 + lincRNA gene predicted gene 9991
Gm35332 1 90686845 to 90703890 17045 - lncRNA gene predicted gene, 35332
Mssq1 1 90687970 to 90688108 138 QTL mandible size and shape QTL 1
Hrq3 1 90687970 to 90688108 138 QTL heart rate QTL 3
D1Mit10 1 90687970 to 90688108 138 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 10
4931428A05Rik 1 90758609 to 90760488 1879 unclassified gene RIKEN cDNA 4931428A05 gene
Gm41918 1 90758762 to 90764014 5252 - lncRNA gene predicted gene, 41918
Col6a3 1 90766860 to 90843971 77111 - protein coding gene collagen, type VI, alpha 3