Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:89967721-90537726

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Asb18 1 89952295 to 90014666 62371 - protein coding gene ankyrin repeat and SOCS box-containing 18
Cpgi559 1 89967716 to 89969209 1493 CpG island CpG island 559
Tssr12906 1 89968274 to 89968315 41 - TSS region transcription start site region 12906
Tssr12907 1 89968686 to 89968690 4 - TSS region transcription start site region 12907
Tssr12908 1 89968718 to 89968729 11 - TSS region transcription start site region 12908
Cpgi560 1 89991869 to 89993325 1456 CpG island CpG island 560
Gm34616 1 90004228 to 90007361 3133 + lncRNA gene predicted gene, 34616
Tssr8014 1 90005190 to 90005194 4 + TSS region transcription start site region 8014
Cpgi561 1 90006655 to 90006888 233 CpG island CpG island 561
Tssr12909 1 90014485 to 90014507 22 - TSS region transcription start site region 12909
Tssr12910 1 90014604 to 90014634 30 - TSS region transcription start site region 12910
Iqca 1 90042132 to 90153401 111269 - protein coding gene IQ motif containing with AAA domain
D1Mit488 1 90071749 to 90071872 123 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 488
Tssr12911 1 90153396 to 90153406 10 - TSS region transcription start site region 12911
Tssr12912 1 90153426 to 90153442 16 - TSS region transcription start site region 12912
4930434B07Rik 1 90153628 to 90159462 5834 + lincRNA gene RIKEN cDNA 4930434B07 gene
Cpgi562 1 90203858 to 90204132 274 CpG island CpG island 562
Ackr3 1 90203980 to 90215724 11744 + protein coding gene atypical chemokine receptor 3
Tssr8015 1 90203995 to 90204012 17 + TSS region transcription start site region 8015
Cpgi563 1 90222239 to 90222391 152 CpG island CpG island 563
Gm38277 1 90227160 to 90228526 1366 - unclassified gene predicted gene, 38277
Gm34930 1 90247265 to 90261655 14390 + lncRNA gene predicted gene, 34930
Tssr8016 1 90252721 to 90252726 5 + TSS region transcription start site region 8016
Gm28721 1 90255276 to 90260120 4844 - lincRNA gene predicted gene 28721
2700003A03Rik 1 90270711 to 90290770 20059 + lncRNA gene RIKEN cDNA 2700003A03 gene
Gm28723 1 90280458 to 90283912 3454 + lincRNA gene predicted gene 28723
Gm27648 1 90327312 to 90327418 106 + rRNA gene predicted gene, 27648
Gm34992 1 90337731 to 90451763 114032 + lncRNA gene predicted gene, 34992
Gm28722 1 90453394 to 90454501 1107 - lincRNA gene predicted gene 28722
Tssr8017 1 90519792 to 90519824 32 + TSS region transcription start site region 8017
Gm35048 1 90520496 to 90523297 2801 + lncRNA gene predicted gene, 35048