Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:89080304-89830308

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51 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sh3bp4 1 89070462 to 89155068 84606 + protein coding gene SH3-domain binding protein 4
Gm38312 1 89097073 to 89098818 1745 + unclassified gene predicted gene, 38312
Gm34331 1 89102255 to 89103770 1515 - lncRNA gene predicted gene, 34331
Tssr12897 1 89102856 to 89102875 19 - TSS region transcription start site region 12897
Tssr7986 1 89103768 to 89103783 15 + TSS region transcription start site region 7986
Tssr7987 1 89120861 to 89120866 5 + TSS region transcription start site region 7987
5730492I20Rik 1 89138523 to 89139912 1389 unclassified non-coding RNA gene RIKEN cDNA 5730492I20 gene
D1Mit487 1 89210658 to 89210794 136 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 487
Tssr7988 1 89235188 to 89235193 5 + TSS region transcription start site region 7988
Gm5259 1 89256182 to 89256981 799 - pseudogene predicted gene 5259
Tssr12898 1 89281297 to 89281302 5 - TSS region transcription start site region 12898
Gm28342 1 89302719 to 89358144 55425 - lincRNA gene predicted gene 28342
Cpgi546 1 89302724 to 89303094 370 CpG island CpG island 546
C030007H22Rik 1 89360342 to 89406133 45791 - lincRNA gene RIKEN cDNA C030007H22 gene
Gm41913 1 89387696 to 89394307 6611 + lncRNA gene predicted gene, 41913
Cpgi547 1 89453926 to 89456223 2297 CpG island CpG island 547
Tssr7989 1 89454769 to 89454885 116 + TSS region transcription start site region 7989
Agap1 1 89454811 to 89895282 440471 + protein coding gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
Tssr7990 1 89454886 to 89454920 34 + TSS region transcription start site region 7990
Tssr7991 1 89454933 to 89454948 15 + TSS region transcription start site region 7991
Tssr7992 1 89455304 to 89455308 4 + TSS region transcription start site region 7992
Tssr7993 1 89463906 to 89463910 4 + TSS region transcription start site region 7993
Tssr7994 1 89482062 to 89482065 3 + TSS region transcription start site region 7994
Gm37297 1 89483438 to 89485821 2383 + unclassified gene predicted gene, 37297
Gm25180 1 89563360 to 89563474 114 + rRNA gene predicted gene, 25180
Tssr12899 1 89563503 to 89563513 10 - TSS region transcription start site region 12899
Tssr12900 1 89563521 to 89563532 11 - TSS region transcription start site region 12900
Gm28499 1 89568765 to 89576602 7837 + sense intronic lncRNA gene predicted gene 28499
Gm41914 1 89577982 to 89580815 2833 - lncRNA gene predicted gene, 41914
Cpgi548 1 89579892 to 89582122 2230 CpG island CpG island 548
Tssr7995 1 89580147 to 89580180 33 + TSS region transcription start site region 7995
Tssr7996 1 89580183 to 89580202 19 + TSS region transcription start site region 7996
Tssr7997 1 89580204 to 89580215 11 + TSS region transcription start site region 7997
Tssr7998 1 89580230 to 89580242 12 + TSS region transcription start site region 7998
Tssr7999 1 89580245 to 89580256 11 + TSS region transcription start site region 7999
Tssr8000 1 89580262 to 89580286 24 + TSS region transcription start site region 8000
Tssr8001 1 89580288 to 89580302 14 + TSS region transcription start site region 8001
Tssr8002 1 89580315 to 89580326 11 + TSS region transcription start site region 8002
Tssr8003 1 89603224 to 89603260 36 + TSS region transcription start site region 8003
Cpgi549 1 89644128 to 89644301 173 CpG island CpG island 549
Tssr8004 1 89659334 to 89659363 29 + TSS region transcription start site region 8004
4933400F21Rik 1 89676507 to 89683892 7385 - lncRNA gene RIKEN cDNA 4933400F21 gene
Tssr12901 1 89683869 to 89683904 35 - TSS region transcription start site region 12901
Gm26037 1 89684802 to 89685112 310 + unclassified non-coding RNA gene predicted gene, 26037
Tssr8005 1 89737697 to 89737702 5 + TSS region transcription start site region 8005
Tssr8006 1 89738206 to 89738230 24 + TSS region transcription start site region 8006
Tssr8007 1 89746996 to 89747004 8 + TSS region transcription start site region 8007
Tssr8008 1 89767727 to 89767746 19 + TSS region transcription start site region 8008
Tssr8009 1 89783463 to 89783468 5 + TSS region transcription start site region 8009
Tssr8010 1 89791264 to 89791268 4 + TSS region transcription start site region 8010
Gm37521 1 89825481 to 89827525 2044 + unclassified gene predicted gene, 37521