Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:88265861-89975866

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152 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia15 1 65849847 to 88568379 22718532 QTL collagen induced arthritis QTL 15
Hjurp 1 88262471 to 88277633 15162 - protein coding gene Holliday junction recognition protein
Tssr12871 1 88274133 to 88274139 6 - TSS region transcription start site region 12871
Tssr12872 1 88274181 to 88274184 3 - TSS region transcription start site region 12872
Cpgi540 1 88276880 to 88278100 1220 CpG island CpG island 540
Tssr12873 1 88277264 to 88277294 30 - TSS region transcription start site region 12873
Tssr12874 1 88277470 to 88277509 39 - TSS region transcription start site region 12874
Tssr12875 1 88277510 to 88277636 126 - TSS region transcription start site region 12875
Cpgi541 1 88278147 to 88278579 432 CpG island CpG island 541
Cpgi542 1 88286352 to 88287251 899 CpG island CpG island 542
Trpm8 1 88306712 to 88388853 82141 + protein coding gene transient receptor potential cation channel, subfamily M, member 8
Tssr7966 1 88306731 to 88306737 6 + TSS region transcription start site region 7966
4930453O03Rik 1 88347489 to 88352930 5441 - antisense lncRNA gene RIKEN cDNA 4930453O03 gene
Tssr7967 1 88406939 to 88406950 11 + TSS region transcription start site region 7967
Tssr7968 1 88406956 to 88406965 9 + TSS region transcription start site region 7968
Spp2 1 88406961 to 88426438 19477 + protein coding gene secreted phosphoprotein 2
Tssr7969 1 88406971 to 88406974 3 + TSS region transcription start site region 7969
Tssr7970 1 88407002 to 88407101 99 + TSS region transcription start site region 7970
Gm29538 1 88443969 to 88462608 18639 - lincRNA gene predicted gene 29538
D1Mit486 1 88449551 to 88449748 197 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 486
Tssr7971 1 88453377 to 88453402 25 + TSS region transcription start site region 7971
Gm28888 1 88459683 to 88465558 5875 + lincRNA gene predicted gene 28888
Tssr12876 1 88462566 to 88462595 29 - TSS region transcription start site region 12876
Tssr12877 1 88462612 to 88462624 12 - TSS region transcription start site region 12877
Tssr7972 1 88472384 to 88472388 4 + TSS region transcription start site region 7972
Tssr7973 1 88472402 to 88472412 10 + TSS region transcription start site region 7973
Glrp1 1 88499871 to 88510066 10195 - protein coding gene glutamine repeat protein 1
Tssr12878 1 88509895 to 88509934 39 - TSS region transcription start site region 12878
Gm19589 1 88551517 to 88562166 10649 + lincRNA gene predicted gene, 19589
Tssr7974 1 88551525 to 88551547 22 + TSS region transcription start site region 7974
Tssr12879 1 88554844 to 88554851 7 - TSS region transcription start site region 12879
Tssr12880 1 88559306 to 88559325 19 - TSS region transcription start site region 12880
Tssr12881 1 88559345 to 88559348 3 - TSS region transcription start site region 12881
Tssr7975 1 88559901 to 88559923 22 + TSS region transcription start site region 7975
Gm41912 1 88566706 to 88569974 3268 - lncRNA gene predicted gene, 41912
D1Mit48 1 88568240 to 88568379 139 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 48
Tssr12882 1 88576597 to 88576609 12 - TSS region transcription start site region 12882
Tssr12883 1 88584648 to 88584661 13 - TSS region transcription start site region 12883
Tssr12884 1 88584783 to 88584790 7 - TSS region transcription start site region 12884
Gm38130 1 88653085 to 88654845 1760 + unclassified gene predicted gene, 38130
Tssr12885 1 88654709 to 88654714 5 - TSS region transcription start site region 12885
Gm29336 1 88656308 to 88658100 1792 + lincRNA gene predicted gene 29336
Arl4c 1 88698225 to 88702191 3966 - protein coding gene ADP-ribosylation factor-like 4C
Tssr12886 1 88698685 to 88698715 30 - TSS region transcription start site region 12886
Tssr12887 1 88699300 to 88699332 32 - TSS region transcription start site region 12887
Tssr12888 1 88700538 to 88700555 17 - TSS region transcription start site region 12888
Cpgi543 1 88700761 to 88702762 2001 CpG island CpG island 543
Tssr12889 1 88700781 to 88700802 21 - TSS region transcription start site region 12889
Tssr12890 1 88701687 to 88701705 18 - TSS region transcription start site region 12890
Tssr12891 1 88702028 to 88702039 11 - TSS region transcription start site region 12891
Tssr12892 1 88702093 to 88702104 11 - TSS region transcription start site region 12892
Tssr12893 1 88702121 to 88702180 59 - TSS region transcription start site region 12893
Tssr7976 1 88702275 to 88702296 21 + TSS region transcription start site region 7976
Tssr12894 1 88702340 to 88702356 16 - TSS region transcription start site region 12894
Cpgi544 1 88705848 to 88706136 288 CpG island CpG island 544
Gm29335 1 88722366 to 88722824 458 - pseudogene predicted gene 29335
D1Mit305 1 88729923 to 88730067 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 305
Platr5 1 88754890 to 88755733 843 + lincRNA gene pluripotency associated transcript 5
Tssr7977 1 88754924 to 88754935 11 + TSS region transcription start site region 7977
Tssr12895 1 88779923 to 88779928 5 - TSS region transcription start site region 12895
D1Mit440 1 88786028 to 88786148 120 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 440
Gm29337 1 88868475 to 88875410 6935 - lincRNA gene predicted gene 29337
Gm4753 1 88932319 to 88933573 1254 + pseudogene predicted gene 4753
Tssr153 1 88956275 to 88956278 3 + TSS region transcription start site region 153
Gm34194 1 88976142 to 89016023 39881 - lncRNA gene predicted gene, 34194
Tssr7978 1 89015723 to 89015728 5 + TSS region transcription start site region 7978
Tssr7979 1 89016083 to 89016103 20 + TSS region transcription start site region 7979
Tssr7980 1 89016106 to 89016133 27 + TSS region transcription start site region 7980
1700067G17Rik 1 89016113 to 89022210 6097 + lincRNA gene RIKEN cDNA 1700067G17 gene
Tssr7981 1 89016135 to 89016147 12 + TSS region transcription start site region 7981
Gm18699 1 89048974 to 89049216 242 + pseudogene predicted gene, 18699
Cpgi545 1 89069910 to 89071301 1391 CpG island CpG island 545
Tssr12896 1 89069995 to 89070004 9 - TSS region transcription start site region 12896
Tssr7982 1 89070364 to 89070371 7 + TSS region transcription start site region 7982
Tssr7983 1 89070406 to 89070421 15 + TSS region transcription start site region 7983
Tssr7984 1 89070439 to 89070457 18 + TSS region transcription start site region 7984
Sh3bp4 1 89070462 to 89155068 84606 + protein coding gene SH3-domain binding protein 4
Tssr7985 1 89070475 to 89070489 14 + TSS region transcription start site region 7985
Gm38312 1 89097073 to 89098818 1745 + unclassified gene predicted gene, 38312
Gm34331 1 89102255 to 89103770 1515 - lncRNA gene predicted gene, 34331
Tssr12897 1 89102856 to 89102875 19 - TSS region transcription start site region 12897
Tssr7986 1 89103768 to 89103783 15 + TSS region transcription start site region 7986
Tssr7987 1 89120861 to 89120866 5 + TSS region transcription start site region 7987
5730492I20Rik 1 89138523 to 89139912 1389 unclassified non-coding RNA gene RIKEN cDNA 5730492I20 gene
D1Mit487 1 89210658 to 89210794 136 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 487
Tssr7988 1 89235188 to 89235193 5 + TSS region transcription start site region 7988
Gm5259 1 89256182 to 89256981 799 - pseudogene predicted gene 5259
Tssr12898 1 89281297 to 89281302 5 - TSS region transcription start site region 12898
Gm28342 1 89302719 to 89358144 55425 - lincRNA gene predicted gene 28342
Cpgi546 1 89302724 to 89303094 370 CpG island CpG island 546
C030007H22Rik 1 89360342 to 89406133 45791 - lincRNA gene RIKEN cDNA C030007H22 gene
Gm41913 1 89387696 to 89394307 6611 + lncRNA gene predicted gene, 41913
Cpgi547 1 89453926 to 89456223 2297 CpG island CpG island 547
Tssr7989 1 89454769 to 89454885 116 + TSS region transcription start site region 7989
Agap1 1 89454811 to 89895282 440471 + protein coding gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
Tssr7990 1 89454886 to 89454920 34 + TSS region transcription start site region 7990
Tssr7991 1 89454933 to 89454948 15 + TSS region transcription start site region 7991
Tssr7992 1 89455304 to 89455308 4 + TSS region transcription start site region 7992
Tssr7993 1 89463906 to 89463910 4 + TSS region transcription start site region 7993
Tssr7994 1 89482062 to 89482065 3 + TSS region transcription start site region 7994
Gm37297 1 89483438 to 89485821 2383 + unclassified gene predicted gene, 37297
Gm25180 1 89563360 to 89563474 114 + rRNA gene predicted gene, 25180
Tssr12899 1 89563503 to 89563513 10 - TSS region transcription start site region 12899
Tssr12900 1 89563521 to 89563532 11 - TSS region transcription start site region 12900
Gm28499 1 89568765 to 89576602 7837 + sense intronic lncRNA gene predicted gene 28499
Gm41914 1 89577982 to 89580815 2833 - lncRNA gene predicted gene, 41914
Cpgi548 1 89579892 to 89582122 2230 CpG island CpG island 548
Tssr7995 1 89580147 to 89580180 33 + TSS region transcription start site region 7995
Tssr7996 1 89580183 to 89580202 19 + TSS region transcription start site region 7996
Tssr7997 1 89580204 to 89580215 11 + TSS region transcription start site region 7997
Tssr7998 1 89580230 to 89580242 12 + TSS region transcription start site region 7998
Tssr7999 1 89580245 to 89580256 11 + TSS region transcription start site region 7999
Tssr8000 1 89580262 to 89580286 24 + TSS region transcription start site region 8000
Tssr8001 1 89580288 to 89580302 14 + TSS region transcription start site region 8001
Tssr8002 1 89580315 to 89580326 11 + TSS region transcription start site region 8002
Tssr8003 1 89603224 to 89603260 36 + TSS region transcription start site region 8003
Cpgi549 1 89644128 to 89644301 173 CpG island CpG island 549
Tssr8004 1 89659334 to 89659363 29 + TSS region transcription start site region 8004
4933400F21Rik 1 89676507 to 89683892 7385 - lncRNA gene RIKEN cDNA 4933400F21 gene
Tssr12901 1 89683869 to 89683904 35 - TSS region transcription start site region 12901
Gm26037 1 89684802 to 89685112 310 + unclassified non-coding RNA gene predicted gene, 26037
Tssr8005 1 89737697 to 89737702 5 + TSS region transcription start site region 8005
Tssr8006 1 89738206 to 89738230 24 + TSS region transcription start site region 8006
Tssr8007 1 89746996 to 89747004 8 + TSS region transcription start site region 8007
Tssr8008 1 89767727 to 89767746 19 + TSS region transcription start site region 8008
Tssr8009 1 89783463 to 89783468 5 + TSS region transcription start site region 8009
Tssr8010 1 89791264 to 89791268 4 + TSS region transcription start site region 8010
Gm37521 1 89825481 to 89827525 2044 + unclassified gene predicted gene, 37521
Tssr8011 1 89866396 to 89866401 5 + TSS region transcription start site region 8011
Tssr8012 1 89871107 to 89871137 30 + TSS region transcription start site region 8012
Cpgi550 1 89922863 to 89923678 815 CpG island CpG island 550
Cpgi551 1 89926931 to 89927615 684 CpG island CpG island 551
Gbx2 1 89927962 to 89931176 3214 - protein coding gene gastrulation brain homeobox 2
Cpgi552 1 89928626 to 89929088 462 CpG island CpG island 552
Cpgi553 1 89929888 to 89931942 2054 CpG island CpG island 553
Tssr8013 1 89930211 to 89930249 38 + TSS region transcription start site region 8013
D130058E05Rik 1 89930234 to 89933290 3056 + unclassified non-coding RNA gene RIKEN cDNA D130058E05 gene
Tssr12902 1 89930683 to 89930708 25 - TSS region transcription start site region 12902
Tssr12903 1 89931153 to 89931168 15 - TSS region transcription start site region 12903
Tssr12904 1 89931181 to 89931198 17 - TSS region transcription start site region 12904
Cpgi554 1 89932035 to 89932317 282 CpG island CpG island 554
Cpgi555 1 89933761 to 89933944 183 CpG island CpG island 555
Tssr12905 1 89934494 to 89934520 26 - TSS region transcription start site region 12905
Cpgi556 1 89939648 to 89939895 247 CpG island CpG island 556
Cpgi557 1 89940351 to 89940703 352 CpG island CpG island 557
Cpgi558 1 89941564 to 89942355 791 CpG island CpG island 558
Asb18 1 89952295 to 90014666 62371 - protein coding gene ankyrin repeat and SOCS box-containing 18
Gm41915 1 89962520 to 89966561 4041 - lncRNA gene predicted gene, 41915
Cpgi559 1 89967716 to 89969209 1493 CpG island CpG island 559
Tssr12906 1 89968274 to 89968315 41 - TSS region transcription start site region 12906
Tssr12907 1 89968686 to 89968690 4 - TSS region transcription start site region 12907
Tssr12908 1 89968718 to 89968729 11 - TSS region transcription start site region 12908