Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:88235538-89165555

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cia15 1 65849847 to 88568379 22718532 QTL collagen induced arthritis QTL 15
Mroh2a 1 88226991 to 88262289 35298 + protein coding gene maestro heat-like repeat family member 2A
Cpgi537 1 88241318 to 88241628 310 CpG island CpG island 537
Cpgi538 1 88252894 to 88253601 707 CpG island CpG island 538
Cpgi539 1 88254863 to 88255051 188 CpG island CpG island 539
Tssr7958 1 88259110 to 88259125 15 + TSS region transcription start site region 7958
Tssr7959 1 88259132 to 88259145 13 + TSS region transcription start site region 7959
Tssr7960 1 88259147 to 88259168 21 + TSS region transcription start site region 7960
Tssr7961 1 88259194 to 88259197 3 + TSS region transcription start site region 7961
Tssr7962 1 88259348 to 88259357 9 + TSS region transcription start site region 7962
Tssr7963 1 88259376 to 88259387 11 + TSS region transcription start site region 7963
Tssr7964 1 88259391 to 88259414 23 + TSS region transcription start site region 7964
Tssr7965 1 88259427 to 88259438 11 + TSS region transcription start site region 7965
Hjurp 1 88262471 to 88277633 15162 - protein coding gene Holliday junction recognition protein
Tssr12870 1 88264818 to 88264865 47 - TSS region transcription start site region 12870
Tssr12871 1 88274133 to 88274139 6 - TSS region transcription start site region 12871
Tssr12872 1 88274181 to 88274184 3 - TSS region transcription start site region 12872
Cpgi540 1 88276880 to 88278100 1220 CpG island CpG island 540
Tssr12873 1 88277264 to 88277294 30 - TSS region transcription start site region 12873
Tssr12874 1 88277470 to 88277509 39 - TSS region transcription start site region 12874
Tssr12875 1 88277510 to 88277636 126 - TSS region transcription start site region 12875
Cpgi541 1 88278147 to 88278579 432 CpG island CpG island 541
Cpgi542 1 88286352 to 88287251 899 CpG island CpG island 542
Trpm8 1 88306712 to 88388853 82141 + protein coding gene transient receptor potential cation channel, subfamily M, member 8
Tssr7966 1 88306731 to 88306737 6 + TSS region transcription start site region 7966
4930453O03Rik 1 88347489 to 88352930 5441 - antisense lncRNA gene RIKEN cDNA 4930453O03 gene
Tssr7967 1 88406939 to 88406950 11 + TSS region transcription start site region 7967
Tssr7968 1 88406956 to 88406965 9 + TSS region transcription start site region 7968
Spp2 1 88406961 to 88426438 19477 + protein coding gene secreted phosphoprotein 2
Tssr7969 1 88406971 to 88406974 3 + TSS region transcription start site region 7969
Tssr7970 1 88407002 to 88407101 99 + TSS region transcription start site region 7970
Gm29538 1 88443969 to 88462608 18639 - lincRNA gene predicted gene 29538
D1Mit486 1 88449551 to 88449748 197 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 486
Tssr7971 1 88453377 to 88453402 25 + TSS region transcription start site region 7971
Gm28888 1 88459683 to 88465558 5875 + lincRNA gene predicted gene 28888
Tssr12876 1 88462566 to 88462595 29 - TSS region transcription start site region 12876
Tssr12877 1 88462612 to 88462624 12 - TSS region transcription start site region 12877
Tssr7972 1 88472384 to 88472388 4 + TSS region transcription start site region 7972
Tssr7973 1 88472402 to 88472412 10 + TSS region transcription start site region 7973
Glrp1 1 88499871 to 88510066 10195 - protein coding gene glutamine repeat protein 1
Tssr12878 1 88509895 to 88509934 39 - TSS region transcription start site region 12878
Gm19589 1 88551517 to 88562166 10649 + lincRNA gene predicted gene, 19589
Tssr7974 1 88551525 to 88551547 22 + TSS region transcription start site region 7974
Tssr12879 1 88554844 to 88554851 7 - TSS region transcription start site region 12879
Tssr12880 1 88559306 to 88559325 19 - TSS region transcription start site region 12880
Tssr12881 1 88559345 to 88559348 3 - TSS region transcription start site region 12881
Tssr7975 1 88559901 to 88559923 22 + TSS region transcription start site region 7975
Gm41912 1 88566706 to 88569974 3268 - lncRNA gene predicted gene, 41912
D1Mit48 1 88568240 to 88568379 139 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 48
Tssr12882 1 88576597 to 88576609 12 - TSS region transcription start site region 12882
Tssr12883 1 88584648 to 88584661 13 - TSS region transcription start site region 12883
Tssr12884 1 88584783 to 88584790 7 - TSS region transcription start site region 12884
Gm38130 1 88653085 to 88654845 1760 + unclassified gene predicted gene, 38130
Tssr12885 1 88654709 to 88654714 5 - TSS region transcription start site region 12885
Gm29336 1 88656308 to 88658100 1792 + lincRNA gene predicted gene 29336
Arl4c 1 88698225 to 88702191 3966 - protein coding gene ADP-ribosylation factor-like 4C
Tssr12886 1 88698685 to 88698715 30 - TSS region transcription start site region 12886
Tssr12887 1 88699300 to 88699332 32 - TSS region transcription start site region 12887
Tssr12888 1 88700538 to 88700555 17 - TSS region transcription start site region 12888
Cpgi543 1 88700761 to 88702762 2001 CpG island CpG island 543
Tssr12889 1 88700781 to 88700802 21 - TSS region transcription start site region 12889
Tssr12890 1 88701687 to 88701705 18 - TSS region transcription start site region 12890
Tssr12891 1 88702028 to 88702039 11 - TSS region transcription start site region 12891
Tssr12892 1 88702093 to 88702104 11 - TSS region transcription start site region 12892
Tssr12893 1 88702121 to 88702180 59 - TSS region transcription start site region 12893
Tssr7976 1 88702275 to 88702296 21 + TSS region transcription start site region 7976
Tssr12894 1 88702340 to 88702356 16 - TSS region transcription start site region 12894
Cpgi544 1 88705848 to 88706136 288 CpG island CpG island 544
Gm29335 1 88722366 to 88722824 458 - pseudogene predicted gene 29335
D1Mit305 1 88729923 to 88730067 144 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 305
Platr5 1 88754890 to 88755733 843 + lincRNA gene pluripotency associated transcript 5
Tssr7977 1 88754924 to 88754935 11 + TSS region transcription start site region 7977
Tssr12895 1 88779923 to 88779928 5 - TSS region transcription start site region 12895
D1Mit440 1 88786028 to 88786148 120 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 440
Gm29337 1 88868475 to 88875410 6935 - lincRNA gene predicted gene 29337
Gm4753 1 88932319 to 88933573 1254 + pseudogene predicted gene 4753
Tssr153 1 88956275 to 88956278 3 + TSS region transcription start site region 153
Gm34194 1 88976142 to 89016023 39881 - lncRNA gene predicted gene, 34194
Tssr7978 1 89015723 to 89015728 5 + TSS region transcription start site region 7978
Tssr7979 1 89016083 to 89016103 20 + TSS region transcription start site region 7979
Tssr7980 1 89016106 to 89016133 27 + TSS region transcription start site region 7980
1700067G17Rik 1 89016113 to 89022210 6097 + lincRNA gene RIKEN cDNA 1700067G17 gene
Tssr7981 1 89016135 to 89016147 12 + TSS region transcription start site region 7981
Gm18699 1 89048974 to 89049216 242 + pseudogene predicted gene, 18699
Cpgi545 1 89069910 to 89071301 1391 CpG island CpG island 545
Tssr12896 1 89069995 to 89070004 9 - TSS region transcription start site region 12896
Tssr7982 1 89070364 to 89070371 7 + TSS region transcription start site region 7982
Tssr7983 1 89070406 to 89070421 15 + TSS region transcription start site region 7983
Tssr7984 1 89070439 to 89070457 18 + TSS region transcription start site region 7984
Sh3bp4 1 89070462 to 89155068 84606 + protein coding gene SH3-domain binding protein 4
Tssr7985 1 89070475 to 89070489 14 + TSS region transcription start site region 7985
Gm38312 1 89097073 to 89098818 1745 + unclassified gene predicted gene, 38312
Gm34331 1 89102255 to 89103770 1515 - lncRNA gene predicted gene, 34331
Tssr12897 1 89102856 to 89102875 19 - TSS region transcription start site region 12897
Tssr7986 1 89103768 to 89103783 15 + TSS region transcription start site region 7986
Tssr7987 1 89120861 to 89120866 5 + TSS region transcription start site region 7987
5730492I20Rik 1 89138523 to 89139912 1389 unclassified non-coding RNA gene RIKEN cDNA 5730492I20 gene