Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:88156731-88456737

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ugt1a10 1 88055388 to 88219004 163616 + protein coding gene UDP glycosyltransferase 1 family, polypeptide A10
Gm20528 1 88055393 to 88218584 163191 - unclassified non-coding RNA gene predicted gene 20528
Ugt1a9 1 88070800 to 88218997 148197 + protein coding gene UDP glucuronosyltransferase 1 family, polypeptide A9
Ugt1a8 1 88087813 to 88219004 131191 + protein coding gene UDP glucuronosyltransferase 1 family, polypeptide A8
Ugt1a7c 1 88095062 to 88220002 124940 + protein coding gene UDP glucuronosyltransferase 1 family, polypeptide A7C
Ugt1a6b 1 88103257 to 88218998 115741 + protein coding gene UDP glucuronosyltransferase 1 family, polypeptide A6B
Ugt1a6a 1 88134809 to 88218997 84188 + protein coding gene UDP glucuronosyltransferase 1 family, polypeptide A6A
Tssr7944 1 88165984 to 88165991 7 + TSS region transcription start site region 7944
Tssr7945 1 88166004 to 88166037 33 + TSS region transcription start site region 7945
Ugt1a5 1 88166012 to 88218997 52985 + protein coding gene UDP glucuronosyltransferase 1 family, polypeptide A5
Tssr7946 1 88166746 to 88166762 16 + TSS region transcription start site region 7946
Tssr7947 1 88186587 to 88186590 3 + TSS region transcription start site region 7947
Tssr7948 1 88186602 to 88186619 17 + TSS region transcription start site region 7948
Tssr7949 1 88186626 to 88186637 11 + TSS region transcription start site region 7949
Gm15368 1 88186671 to 88187519 848 + pseudogene predicted gene 15368
Gm15376 1 88191901 to 88192683 782 + pseudogene predicted gene 15376
Ugt1a2 1 88200601 to 88218997 18396 + protein coding gene UDP glucuronosyltransferase 1 family, polypeptide A2
Tssr7950 1 88200605 to 88200631 26 + TSS region transcription start site region 7950
Dnajb3 1 88204732 to 88205748 1016 - protein coding gene DnaJ heat shock protein family (Hsp40) member B3
Cpgi536 1 88205143 to 88206042 899 CpG island CpG island 536
Tssr12867 1 88205674 to 88205746 72 - TSS region transcription start site region 12867
Tssr12868 1 88205750 to 88205770 20 - TSS region transcription start site region 12868
Tssr7951 1 88205842 to 88205853 11 + TSS region transcription start site region 7951
Tssr7952 1 88211956 to 88211985 29 + TSS region transcription start site region 7952
Ugt1a1 1 88211959 to 88218997 7038 + protein coding gene UDP glucuronosyltransferase 1 family, polypeptide A1
Tssr7953 1 88212548 to 88212569 21 + TSS region transcription start site region 7953
Tssr7954 1 88212682 to 88212700 18 + TSS region transcription start site region 7954
Tssr12869 1 88213939 to 88213953 14 - TSS region transcription start site region 12869
Tssr7955 1 88218428 to 88218456 28 + TSS region transcription start site region 7955
Mroh2a 1 88226991 to 88262289 35298 + protein coding gene maestro heat-like repeat family member 2A
Tssr7956 1 88227005 to 88227064 59 + TSS region transcription start site region 7956
Tssr7957 1 88227070 to 88227071 1 + TSS region transcription start site region 7957
Cpgi537 1 88241318 to 88241628 310 CpG island CpG island 537
Cpgi538 1 88252894 to 88253601 707 CpG island CpG island 538
Cpgi539 1 88254863 to 88255051 188 CpG island CpG island 539
Tssr7958 1 88259110 to 88259125 15 + TSS region transcription start site region 7958
Tssr7959 1 88259132 to 88259145 13 + TSS region transcription start site region 7959
Tssr7960 1 88259147 to 88259168 21 + TSS region transcription start site region 7960
Tssr7961 1 88259194 to 88259197 3 + TSS region transcription start site region 7961
Tssr7962 1 88259348 to 88259357 9 + TSS region transcription start site region 7962
Tssr7963 1 88259376 to 88259387 11 + TSS region transcription start site region 7963
Tssr7964 1 88259391 to 88259414 23 + TSS region transcription start site region 7964
Tssr7965 1 88259427 to 88259438 11 + TSS region transcription start site region 7965
Hjurp 1 88262471 to 88277633 15162 - protein coding gene Holliday junction recognition protein
Tssr12870 1 88264818 to 88264865 47 - TSS region transcription start site region 12870
Tssr12871 1 88274133 to 88274139 6 - TSS region transcription start site region 12871
Tssr12872 1 88274181 to 88274184 3 - TSS region transcription start site region 12872
Cpgi540 1 88276880 to 88278100 1220 CpG island CpG island 540
Tssr12873 1 88277264 to 88277294 30 - TSS region transcription start site region 12873
Tssr12874 1 88277470 to 88277509 39 - TSS region transcription start site region 12874
Tssr12875 1 88277510 to 88277636 126 - TSS region transcription start site region 12875
Cpgi541 1 88278147 to 88278579 432 CpG island CpG island 541
Cpgi542 1 88286352 to 88287251 899 CpG island CpG island 542
Trpm8 1 88306712 to 88388853 82141 + protein coding gene transient receptor potential cation channel, subfamily M, member 8
Tssr7966 1 88306731 to 88306737 6 + TSS region transcription start site region 7966
4930453O03Rik 1 88347489 to 88352930 5441 - antisense lncRNA gene RIKEN cDNA 4930453O03 gene
Tssr7967 1 88406939 to 88406950 11 + TSS region transcription start site region 7967
Tssr7968 1 88406956 to 88406965 9 + TSS region transcription start site region 7968
Spp2 1 88406961 to 88426438 19477 + protein coding gene secreted phosphoprotein 2
Tssr7969 1 88406971 to 88406974 3 + TSS region transcription start site region 7969
Tssr7970 1 88407002 to 88407101 99 + TSS region transcription start site region 7970
Gm29538 1 88443969 to 88462608 18639 - lincRNA gene predicted gene 29538
D1Mit486 1 88449551 to 88449748 197 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 486
Tssr7971 1 88453377 to 88453402 25 + TSS region transcription start site region 7971