Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:8813685-9785179

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sntg1 1 8361475 to 9299878 938403 - protein coding gene syntrophin, gamma 1
Gm36964 1 8815842 to 8816039 197 + pseudogene predicted gene, 36964
Gm24276 1 8816138 to 8816247 109 + miRNA gene predicted gene, 24276
Gm6152 1 8855928 to 8856267 339 - pseudogene predicted gene 6152
Gm7445 1 8856763 to 8857102 339 + pseudogene predicted gene 7445
Tssr5890 1 8936384 to 8936402 18 + TSS region transcription start site region 5890
Tssr5891 1 8936405 to 8936416 11 + TSS region transcription start site region 5891
Gm7493 1 8962996 to 8963621 625 - pseudogene predicted gene 7493
Gm37629 1 9191067 to 9192116 1049 - unclassified gene predicted gene, 37629
Gm38008 1 9258617 to 9259134 517 - pseudogene predicted gene, 38008
Gm37143 1 9286922 to 9290180 3258 + unclassified gene predicted gene, 37143
Tssr10915 1 9298499 to 9298512 13 - TSS region transcription start site region 10915
Cpgi22 1 9298685 to 9300179 1494 CpG island CpG island 22
Tssr10916 1 9298821 to 9298878 57 - TSS region transcription start site region 10916
Tssr10917 1 9299251 to 9299306 55 - TSS region transcription start site region 10917
Tssr10918 1 9299669 to 9299689 20 - TSS region transcription start site region 10918
Tssr5892 1 9377649 to 9377653 4 + TSS region transcription start site region 5892
Gm6187 1 9396668 to 9398567 1899 - pseudogene predicted gene 6187
Gm30719 1 9437054 to 9438070 1016 + lncRNA gene predicted gene, 30719
Gm18299 1 9439741 to 9440376 635 - pseudogene predicted gene, 18299
Gm7512 1 9450579 to 9451748 1169 + pseudogene predicted gene 7512
Tssr5893 1 9450588 to 9450594 6 + TSS region transcription start site region 5893
Gm24765 1 9458670 to 9458772 102 + snRNA gene predicted gene, 24765
Gm18300 1 9499359 to 9501514 2155 - pseudogene predicted gene, 18300
Cpgi23 1 9545047 to 9546239 1192 CpG island CpG island 23
Tssr5894 1 9545379 to 9545388 9 + TSS region transcription start site region 5894
Tssr5895 1 9545397 to 9545479 82 + TSS region transcription start site region 5895
Rrs1 1 9545408 to 9547455 2047 + protein coding gene ribosome biogenesis regulator 1
Tssr5896 1 9545489 to 9545495 6 + TSS region transcription start site region 5896
Tssr5897 1 9545921 to 9545988 67 + TSS region transcription start site region 5897
Adhfe1 1 9547935 to 9577968 30033 + protein coding gene alcohol dehydrogenase, iron containing, 1
Tssr5898 1 9548049 to 9548101 52 + TSS region transcription start site region 5898
Tssr5899 1 9548114 to 9548125 11 + TSS region transcription start site region 5899
2610203C22Rik 1 9560832 to 9631092 70260 - lncRNA gene RIKEN cDNA 2610203C22 gene
Gm6161 1 9574548 to 9575649 1101 + pseudogene predicted gene 6161
Tssr5900 1 9601135 to 9601144 9 + TSS region transcription start site region 5900
Tssr5901 1 9601163 to 9601256 93 + TSS region transcription start site region 5901
Tssr5902 1 9601263 to 9601310 47 + TSS region transcription start site region 5902
Vxn 1 9601267 to 9627142 25875 + protein coding gene vexin
Tssr5903 1 9601311 to 9601325 14 + TSS region transcription start site region 5903
Tssr5904 1 9601336 to 9601348 12 + TSS region transcription start site region 5904
Tssr5905 1 9601456 to 9601487 31 + TSS region transcription start site region 5905
Tssr5906 1 9601491 to 9601504 13 + TSS region transcription start site region 5906
Tssr10919 1 9631101 to 9631116 15 - TSS region transcription start site region 10919
Tssr10920 1 9631149 to 9631173 24 - TSS region transcription start site region 10920
Tssr10921 1 9631175 to 9631189 14 - TSS region transcription start site region 10921
Tssr10922 1 9636888 to 9636901 13 - TSS region transcription start site region 10922
Gm29520 1 9639255 to 9640582 1327 - lincRNA gene predicted gene 29520
Cpgi24 1 9649309 to 9649468 159 CpG island CpG island 24
Mybl1 1 9667415 to 9700209 32794 - protein coding gene myeloblastosis oncogene-like 1
Tssr10923 1 9667700 to 9667701 1 - TSS region transcription start site region 10923
Tssr10924 1 9682206 to 9682208 2 - TSS region transcription start site region 10924
Tssr10925 1 9685535 to 9685539 4 - TSS region transcription start site region 10925
Tssr10926 1 9696863 to 9696874 11 - TSS region transcription start site region 10926
Cpgi25 1 9699664 to 9701102 1438 CpG island CpG island 25
Tssr10927 1 9700317 to 9700329 12 - TSS region transcription start site region 10927
Tssr10928 1 9700343 to 9700386 43 - TSS region transcription start site region 10928
Tssr10929 1 9700393 to 9700412 19 - TSS region transcription start site region 10929
Vcpip1 1 9718622 to 9748382 29760 - protein coding gene valosin containing protein (p97)/p47 complex interacting protein 1
Tssr10930 1 9721364 to 9721398 34 - TSS region transcription start site region 10930
Tssr10931 1 9721404 to 9721416 12 - TSS region transcription start site region 10931
Tssr10932 1 9721455 to 9721503 48 - TSS region transcription start site region 10932
Tssr10933 1 9725930 to 9725934 4 - TSS region transcription start site region 10933
Tssr10934 1 9736594 to 9736597 3 - TSS region transcription start site region 10934
Tssr10935 1 9745571 to 9745598 27 - TSS region transcription start site region 10935
Tssr10936 1 9746493 to 9746513 20 - TSS region transcription start site region 10936
Cpgi26 1 9747453 to 9748748 1295 CpG island CpG island 26
1700034P13Rik 1 9747648 to 9771256 23608 + antisense lncRNA gene RIKEN cDNA 1700034P13 gene
Tssr10937 1 9748227 to 9748243 16 - TSS region transcription start site region 10937
Tssr10938 1 9748247 to 9748272 25 - TSS region transcription start site region 10938
Tssr10939 1 9748277 to 9748320 43 - TSS region transcription start site region 10939
Tssr10940 1 9748330 to 9748353 23 - TSS region transcription start site region 10940
Tssr10941 1 9748355 to 9748367 12 - TSS region transcription start site region 10941
Tssr10942 1 9748376 to 9748451 75 - TSS region transcription start site region 10942
D1Mit296 1 9749730 to 9749873 143 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 296
D1Mit58 1 9757119 to 9757372 253 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 58
D1Mit58.2 1 9757246 to 9757363 117 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 58.2
Tssr5907 1 9759104 to 9759112 8 + TSS region transcription start site region 5907
Gm39590 1 9775558 to 9791319 15761 + lncRNA gene predicted gene, 39590
Tssr5908 1 9783723 to 9783735 12 + TSS region transcription start site region 5908