Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:87970129-88220134

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Usp40 1 87945119 to 88008551 63432 - protein coding gene ubiquitin specific peptidase 40
Cpgi535 1 88008028 to 88008638 610 CpG island CpG island 535
Tssr12866 1 88008520 to 88008556 36 - TSS region transcription start site region 12866
Gm25198 1 88015924 to 88016033 109 + miRNA gene predicted gene, 25198
Gm5832 1 88022381 to 88023962 1581 + pseudogene predicted gene 5832
Tssr7921 1 88025141 to 88025158 17 + TSS region transcription start site region 7921
Gm15375 1 88025211 to 88026059 848 + pseudogene predicted gene 15375
Tssr7922 1 88055377 to 88055449 72 + TSS region transcription start site region 7922
Ugt1a10 1 88055388 to 88219004 163616 + protein coding gene UDP glycosyltransferase 1 family, polypeptide A10
Gm20528 1 88055393 to 88218584 163191 - unclassified non-coding RNA gene predicted gene 20528
Gm38421 1 88055411 to 88056340 929 + pseudogene predicted gene, 38421
Tssr7923 1 88055455 to 88055466 11 + TSS region transcription start site region 7923
Tssr7924 1 88055467 to 88055478 11 + TSS region transcription start site region 7924
Tssr7925 1 88055490 to 88055495 5 + TSS region transcription start site region 7925
Tssr7926 1 88055514 to 88055519 5 + TSS region transcription start site region 7926
Tssr7927 1 88070727 to 88070746 19 + TSS region transcription start site region 7927
Tssr7928 1 88070753 to 88070760 7 + TSS region transcription start site region 7928
Tssr7929 1 88070765 to 88070797 32 + TSS region transcription start site region 7929
Ugt1a9 1 88070800 to 88218997 148197 + protein coding gene UDP glucuronosyltransferase 1 family, polypeptide A9
Tssr7930 1 88070804 to 88070813 9 + TSS region transcription start site region 7930
Tssr7931 1 88073749 to 88073796 47 + TSS region transcription start site region 7931
Tssr7932 1 88087802 to 88087848 46 + TSS region transcription start site region 7932
Ugt1a8 1 88087813 to 88219004 131191 + protein coding gene UDP glucuronosyltransferase 1 family, polypeptide A8
Tssr7933 1 88087852 to 88087867 15 + TSS region transcription start site region 7933
Tssr7934 1 88087871 to 88087881 10 + TSS region transcription start site region 7934
Tssr7935 1 88095003 to 88095010 7 + TSS region transcription start site region 7935
Tssr7936 1 88095054 to 88095088 34 + TSS region transcription start site region 7936
Ugt1a7c 1 88095062 to 88220002 124940 + protein coding gene UDP glucuronosyltransferase 1 family, polypeptide A7C
Tssr7937 1 88095095 to 88095121 26 + TSS region transcription start site region 7937
Tssr7938 1 88095129 to 88095134 5 + TSS region transcription start site region 7938
Tssr7939 1 88095578 to 88095592 14 + TSS region transcription start site region 7939
Gm15373 1 88097918 to 88098131 213 + pseudogene predicted gene 15373
Tssr7940 1 88103229 to 88103249 20 + TSS region transcription start site region 7940
Ugt1a6b 1 88103257 to 88218998 115741 + protein coding gene UDP glucuronosyltransferase 1 family, polypeptide A6B
Tssr7941 1 88106834 to 88106840 6 + TSS region transcription start site region 7941
Gm15372 1 88126776 to 88127609 833 + pseudogene predicted gene 15372
Gm15370 1 88129581 to 88129833 252 + pseudogene predicted gene 15370
Tssr7942 1 88134786 to 88134806 20 + TSS region transcription start site region 7942
Ugt1a6a 1 88134809 to 88218997 84188 + protein coding gene UDP glucuronosyltransferase 1 family, polypeptide A6A
Tssr7943 1 88138364 to 88138371 7 + TSS region transcription start site region 7943
Gm15369 1 88146376 to 88146769 393 + pseudogene predicted gene 15369
Gm15374 1 88151038 to 88151881 843 + pseudogene predicted gene 15374
Gm15371 1 88153788 to 88154571 783 + pseudogene predicted gene 15371
Tssr7944 1 88165984 to 88165991 7 + TSS region transcription start site region 7944
Tssr7945 1 88166004 to 88166037 33 + TSS region transcription start site region 7945
Ugt1a5 1 88166012 to 88218997 52985 + protein coding gene UDP glucuronosyltransferase 1 family, polypeptide A5
Tssr7946 1 88166746 to 88166762 16 + TSS region transcription start site region 7946
Tssr7947 1 88186587 to 88186590 3 + TSS region transcription start site region 7947
Tssr7948 1 88186602 to 88186619 17 + TSS region transcription start site region 7948
Tssr7949 1 88186626 to 88186637 11 + TSS region transcription start site region 7949
Gm15368 1 88186671 to 88187519 848 + pseudogene predicted gene 15368
Gm15376 1 88191901 to 88192683 782 + pseudogene predicted gene 15376
Ugt1a2 1 88200601 to 88218997 18396 + protein coding gene UDP glucuronosyltransferase 1 family, polypeptide A2
Tssr7950 1 88200605 to 88200631 26 + TSS region transcription start site region 7950
Dnajb3 1 88204732 to 88205748 1016 - protein coding gene DnaJ heat shock protein family (Hsp40) member B3
Cpgi536 1 88205143 to 88206042 899 CpG island CpG island 536
Tssr12867 1 88205674 to 88205746 72 - TSS region transcription start site region 12867
Tssr12868 1 88205750 to 88205770 20 - TSS region transcription start site region 12868
Tssr7951 1 88205842 to 88205853 11 + TSS region transcription start site region 7951
Tssr7952 1 88211956 to 88211985 29 + TSS region transcription start site region 7952
Ugt1a1 1 88211959 to 88218997 7038 + protein coding gene UDP glucuronosyltransferase 1 family, polypeptide A1
Tssr7953 1 88212548 to 88212569 21 + TSS region transcription start site region 7953
Tssr7954 1 88212682 to 88212700 18 + TSS region transcription start site region 7954
Tssr12869 1 88213939 to 88213953 14 - TSS region transcription start site region 12869
Tssr7955 1 88218428 to 88218456 28 + TSS region transcription start site region 7955