Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:87778257-88543998

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146 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atg16l1 1 87756006 to 87792428 36422 + protein coding gene autophagy related 16-like 1 (S. cerevisiae)
Scarna6 1 87784571 to 87784818 247 + snoRNA gene small Cajal body-specific RNA 6
Tssr7894 1 87803638 to 87803662 24 + TSS region transcription start site region 7894
Sag 1 87803680 to 87845158 41478 + protein coding gene S-antigen, retina and pineal gland (arrestin)
Tssr7895 1 87803863 to 87803880 17 + TSS region transcription start site region 7895
Tssr7896 1 87803897 to 87803906 9 + TSS region transcription start site region 7896
Tssr7897 1 87803915 to 87803929 14 + TSS region transcription start site region 7897
Tssr7898 1 87803933 to 87803945 12 + TSS region transcription start site region 7898
Tssr7899 1 87813342 to 87813351 9 + TSS region transcription start site region 7899
Tssr7900 1 87814796 to 87814808 12 + TSS region transcription start site region 7900
Tssr7901 1 87828289 to 87828292 3 + TSS region transcription start site region 7901
Tssr7902 1 87828567 to 87828593 26 + TSS region transcription start site region 7902
Tssr7903 1 87835530 to 87835535 5 + TSS region transcription start site region 7903
Gm38609 1 87844857 to 87853269 8412 - lncRNA gene predicted gene, 38609
Cpgi534 1 87852990 to 87854276 1286 CpG island CpG island 534
Tssr12864 1 87853153 to 87853167 14 - TSS region transcription start site region 12864
Tssr7904 1 87853264 to 87853306 42 + TSS region transcription start site region 7904
Dgkd 1 87853287 to 87945180 91893 + protein coding gene diacylglycerol kinase, delta
Tssr7905 1 87853327 to 87853332 5 + TSS region transcription start site region 7905
Tssr7906 1 87853338 to 87853343 5 + TSS region transcription start site region 7906
Gm19582 1 87853347 to 87854299 952 - antisense lncRNA gene predicted gene, 19582
Tssr12865 1 87854246 to 87854259 13 - TSS region transcription start site region 12865
Tssr7907 1 87864184 to 87864198 14 + TSS region transcription start site region 7907
4833421G17Rik 1 87865073 to 87865916 843 + unclassified gene RIKEN cDNA 4833421G17 gene
Tssr7908 1 87865101 to 87865106 5 + TSS region transcription start site region 7908
Tssr7909 1 87878140 to 87878155 15 + TSS region transcription start site region 7909
Tssr7910 1 87878162 to 87878183 21 + TSS region transcription start site region 7910
Tssr7911 1 87878185 to 87878198 13 + TSS region transcription start site region 7911
Tssr7912 1 87878205 to 87878214 9 + TSS region transcription start site region 7912
Tssr7913 1 87882695 to 87882701 6 + TSS region transcription start site region 7913
Tssr7914 1 87891909 to 87891921 12 + TSS region transcription start site region 7914
Tssr7915 1 87896137 to 87896141 4 + TSS region transcription start site region 7915
Gm38365 1 87897540 to 87900532 2992 + unclassified gene predicted gene, 38365
Tssr7916 1 87900466 to 87900489 23 + TSS region transcription start site region 7916
Tssr7917 1 87901221 to 87901232 11 + TSS region transcription start site region 7917
Tssr7918 1 87901243 to 87901263 20 + TSS region transcription start site region 7918
Tssr152 1 87901266 to 87901285 19 + TSS region transcription start site region 152
Tssr7919 1 87909041 to 87909056 15 + TSS region transcription start site region 7919
Tssr7920 1 87909073 to 87909111 38 + TSS region transcription start site region 7920
Usp40 1 87945119 to 88008551 63432 - protein coding gene ubiquitin specific peptidase 40
Cpgi535 1 88008028 to 88008638 610 CpG island CpG island 535
Tssr12866 1 88008520 to 88008556 36 - TSS region transcription start site region 12866
Gm25198 1 88015924 to 88016033 109 + miRNA gene predicted gene, 25198
Gm5832 1 88022381 to 88023962 1581 + pseudogene predicted gene 5832
Tssr7921 1 88025141 to 88025158 17 + TSS region transcription start site region 7921
Gm15375 1 88025211 to 88026059 848 + pseudogene predicted gene 15375
Tssr7922 1 88055377 to 88055449 72 + TSS region transcription start site region 7922
Ugt1a10 1 88055388 to 88219004 163616 + protein coding gene UDP glycosyltransferase 1 family, polypeptide A10
Gm20528 1 88055393 to 88218584 163191 - unclassified non-coding RNA gene predicted gene 20528
Gm38421 1 88055411 to 88056340 929 + pseudogene predicted gene, 38421
Tssr7923 1 88055455 to 88055466 11 + TSS region transcription start site region 7923
Tssr7924 1 88055467 to 88055478 11 + TSS region transcription start site region 7924
Tssr7925 1 88055490 to 88055495 5 + TSS region transcription start site region 7925
Tssr7926 1 88055514 to 88055519 5 + TSS region transcription start site region 7926
Tssr7927 1 88070727 to 88070746 19 + TSS region transcription start site region 7927
Tssr7928 1 88070753 to 88070760 7 + TSS region transcription start site region 7928
Tssr7929 1 88070765 to 88070797 32 + TSS region transcription start site region 7929
Ugt1a9 1 88070800 to 88218997 148197 + protein coding gene UDP glucuronosyltransferase 1 family, polypeptide A9
Tssr7930 1 88070804 to 88070813 9 + TSS region transcription start site region 7930
Tssr7931 1 88073749 to 88073796 47 + TSS region transcription start site region 7931
Tssr7932 1 88087802 to 88087848 46 + TSS region transcription start site region 7932
Ugt1a8 1 88087813 to 88219004 131191 + protein coding gene UDP glucuronosyltransferase 1 family, polypeptide A8
Tssr7933 1 88087852 to 88087867 15 + TSS region transcription start site region 7933
Tssr7934 1 88087871 to 88087881 10 + TSS region transcription start site region 7934
Tssr7935 1 88095003 to 88095010 7 + TSS region transcription start site region 7935
Tssr7936 1 88095054 to 88095088 34 + TSS region transcription start site region 7936
Ugt1a7c 1 88095062 to 88220002 124940 + protein coding gene UDP glucuronosyltransferase 1 family, polypeptide A7C
Tssr7937 1 88095095 to 88095121 26 + TSS region transcription start site region 7937
Tssr7938 1 88095129 to 88095134 5 + TSS region transcription start site region 7938
Tssr7939 1 88095578 to 88095592 14 + TSS region transcription start site region 7939
Gm15373 1 88097918 to 88098131 213 + pseudogene predicted gene 15373
Tssr7940 1 88103229 to 88103249 20 + TSS region transcription start site region 7940
Ugt1a6b 1 88103257 to 88218998 115741 + protein coding gene UDP glucuronosyltransferase 1 family, polypeptide A6B
Tssr7941 1 88106834 to 88106840 6 + TSS region transcription start site region 7941
Gm15372 1 88126776 to 88127609 833 + pseudogene predicted gene 15372
Gm15370 1 88129581 to 88129833 252 + pseudogene predicted gene 15370
Tssr7942 1 88134786 to 88134806 20 + TSS region transcription start site region 7942
Ugt1a6a 1 88134809 to 88218997 84188 + protein coding gene UDP glucuronosyltransferase 1 family, polypeptide A6A
Tssr7943 1 88138364 to 88138371 7 + TSS region transcription start site region 7943
Gm15369 1 88146376 to 88146769 393 + pseudogene predicted gene 15369
Gm15374 1 88151038 to 88151881 843 + pseudogene predicted gene 15374
Gm15371 1 88153788 to 88154571 783 + pseudogene predicted gene 15371
Tssr7944 1 88165984 to 88165991 7 + TSS region transcription start site region 7944
Tssr7945 1 88166004 to 88166037 33 + TSS region transcription start site region 7945
Ugt1a5 1 88166012 to 88218997 52985 + protein coding gene UDP glucuronosyltransferase 1 family, polypeptide A5
Tssr7946 1 88166746 to 88166762 16 + TSS region transcription start site region 7946
Tssr7947 1 88186587 to 88186590 3 + TSS region transcription start site region 7947
Tssr7948 1 88186602 to 88186619 17 + TSS region transcription start site region 7948
Tssr7949 1 88186626 to 88186637 11 + TSS region transcription start site region 7949
Gm15368 1 88186671 to 88187519 848 + pseudogene predicted gene 15368
Gm15376 1 88191901 to 88192683 782 + pseudogene predicted gene 15376
Ugt1a2 1 88200601 to 88218997 18396 + protein coding gene UDP glucuronosyltransferase 1 family, polypeptide A2
Tssr7950 1 88200605 to 88200631 26 + TSS region transcription start site region 7950
Dnajb3 1 88204732 to 88205748 1016 - protein coding gene DnaJ heat shock protein family (Hsp40) member B3
Cpgi536 1 88205143 to 88206042 899 CpG island CpG island 536
Tssr12867 1 88205674 to 88205746 72 - TSS region transcription start site region 12867
Tssr12868 1 88205750 to 88205770 20 - TSS region transcription start site region 12868
Tssr7951 1 88205842 to 88205853 11 + TSS region transcription start site region 7951
Tssr7952 1 88211956 to 88211985 29 + TSS region transcription start site region 7952
Ugt1a1 1 88211959 to 88218997 7038 + protein coding gene UDP glucuronosyltransferase 1 family, polypeptide A1
Tssr7953 1 88212548 to 88212569 21 + TSS region transcription start site region 7953
Tssr7954 1 88212682 to 88212700 18 + TSS region transcription start site region 7954
Tssr12869 1 88213939 to 88213953 14 - TSS region transcription start site region 12869
Tssr7955 1 88218428 to 88218456 28 + TSS region transcription start site region 7955
Mroh2a 1 88226991 to 88262289 35298 + protein coding gene maestro heat-like repeat family member 2A
Tssr7956 1 88227005 to 88227064 59 + TSS region transcription start site region 7956
Tssr7957 1 88227070 to 88227071 1 + TSS region transcription start site region 7957
Cpgi537 1 88241318 to 88241628 310 CpG island CpG island 537
Cpgi538 1 88252894 to 88253601 707 CpG island CpG island 538
Cpgi539 1 88254863 to 88255051 188 CpG island CpG island 539
Tssr7958 1 88259110 to 88259125 15 + TSS region transcription start site region 7958
Tssr7959 1 88259132 to 88259145 13 + TSS region transcription start site region 7959
Tssr7960 1 88259147 to 88259168 21 + TSS region transcription start site region 7960
Tssr7961 1 88259194 to 88259197 3 + TSS region transcription start site region 7961
Tssr7962 1 88259348 to 88259357 9 + TSS region transcription start site region 7962
Tssr7963 1 88259376 to 88259387 11 + TSS region transcription start site region 7963
Tssr7964 1 88259391 to 88259414 23 + TSS region transcription start site region 7964
Tssr7965 1 88259427 to 88259438 11 + TSS region transcription start site region 7965
Hjurp 1 88262471 to 88277633 15162 - protein coding gene Holliday junction recognition protein
Tssr12870 1 88264818 to 88264865 47 - TSS region transcription start site region 12870
Tssr12871 1 88274133 to 88274139 6 - TSS region transcription start site region 12871
Tssr12872 1 88274181 to 88274184 3 - TSS region transcription start site region 12872
Cpgi540 1 88276880 to 88278100 1220 CpG island CpG island 540
Tssr12873 1 88277264 to 88277294 30 - TSS region transcription start site region 12873
Tssr12874 1 88277470 to 88277509 39 - TSS region transcription start site region 12874
Tssr12875 1 88277510 to 88277636 126 - TSS region transcription start site region 12875
Cpgi541 1 88278147 to 88278579 432 CpG island CpG island 541
Cpgi542 1 88286352 to 88287251 899 CpG island CpG island 542
Trpm8 1 88306712 to 88388853 82141 + protein coding gene transient receptor potential cation channel, subfamily M, member 8
Tssr7966 1 88306731 to 88306737 6 + TSS region transcription start site region 7966
4930453O03Rik 1 88347489 to 88352930 5441 - antisense lncRNA gene RIKEN cDNA 4930453O03 gene
Tssr7967 1 88406939 to 88406950 11 + TSS region transcription start site region 7967
Tssr7968 1 88406956 to 88406965 9 + TSS region transcription start site region 7968
Spp2 1 88406961 to 88426438 19477 + protein coding gene secreted phosphoprotein 2
Tssr7969 1 88406971 to 88406974 3 + TSS region transcription start site region 7969
Tssr7970 1 88407002 to 88407101 99 + TSS region transcription start site region 7970
Gm29538 1 88443969 to 88462608 18639 - lincRNA gene predicted gene 29538
D1Mit486 1 88449551 to 88449748 197 DNA segment DNA Segment, Chr 1 Massachusetts Institute of Technology 486
Tssr7971 1 88453377 to 88453402 25 + TSS region transcription start site region 7971
Gm28888 1 88459683 to 88465558 5875 + lincRNA gene predicted gene 28888
Tssr12876 1 88462566 to 88462595 29 - TSS region transcription start site region 12876
Tssr12877 1 88462612 to 88462624 12 - TSS region transcription start site region 12877
Tssr7972 1 88472384 to 88472388 4 + TSS region transcription start site region 7972
Tssr7973 1 88472402 to 88472412 10 + TSS region transcription start site region 7973
Glrp1 1 88499871 to 88510066 10195 - protein coding gene glutamine repeat protein 1
Tssr12878 1 88509895 to 88509934 39 - TSS region transcription start site region 12878