Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:87759073-88059111

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atg16l1 1 87756006 to 87792428 36422 + protein coding gene autophagy related 16-like 1 (S. cerevisiae)
Tssr7892 1 87766101 to 87766119 18 + TSS region transcription start site region 7892
Tssr7893 1 87776936 to 87776941 5 + TSS region transcription start site region 7893
Gm25395 1 87776938 to 87777209 271 + snoRNA gene predicted gene, 25395
Scarna6 1 87784571 to 87784818 247 + snoRNA gene small Cajal body-specific RNA 6
Tssr7894 1 87803638 to 87803662 24 + TSS region transcription start site region 7894
Sag 1 87803680 to 87845158 41478 + protein coding gene S-antigen, retina and pineal gland (arrestin)
Tssr7895 1 87803863 to 87803880 17 + TSS region transcription start site region 7895
Tssr7896 1 87803897 to 87803906 9 + TSS region transcription start site region 7896
Tssr7897 1 87803915 to 87803929 14 + TSS region transcription start site region 7897
Tssr7898 1 87803933 to 87803945 12 + TSS region transcription start site region 7898
Tssr7899 1 87813342 to 87813351 9 + TSS region transcription start site region 7899
Tssr7900 1 87814796 to 87814808 12 + TSS region transcription start site region 7900
Tssr7901 1 87828289 to 87828292 3 + TSS region transcription start site region 7901
Tssr7902 1 87828567 to 87828593 26 + TSS region transcription start site region 7902
Tssr7903 1 87835530 to 87835535 5 + TSS region transcription start site region 7903
Gm38609 1 87844857 to 87853269 8412 - lncRNA gene predicted gene, 38609
Cpgi534 1 87852990 to 87854276 1286 CpG island CpG island 534
Tssr12864 1 87853153 to 87853167 14 - TSS region transcription start site region 12864
Tssr7904 1 87853264 to 87853306 42 + TSS region transcription start site region 7904
Dgkd 1 87853287 to 87945180 91893 + protein coding gene diacylglycerol kinase, delta
Tssr7905 1 87853327 to 87853332 5 + TSS region transcription start site region 7905
Tssr7906 1 87853338 to 87853343 5 + TSS region transcription start site region 7906
Gm19582 1 87853347 to 87854299 952 - antisense lncRNA gene predicted gene, 19582
Tssr12865 1 87854246 to 87854259 13 - TSS region transcription start site region 12865
Tssr7907 1 87864184 to 87864198 14 + TSS region transcription start site region 7907
4833421G17Rik 1 87865073 to 87865916 843 + unclassified gene RIKEN cDNA 4833421G17 gene
Tssr7908 1 87865101 to 87865106 5 + TSS region transcription start site region 7908
Tssr7909 1 87878140 to 87878155 15 + TSS region transcription start site region 7909
Tssr7910 1 87878162 to 87878183 21 + TSS region transcription start site region 7910
Tssr7911 1 87878185 to 87878198 13 + TSS region transcription start site region 7911
Tssr7912 1 87878205 to 87878214 9 + TSS region transcription start site region 7912
Tssr7913 1 87882695 to 87882701 6 + TSS region transcription start site region 7913
Tssr7914 1 87891909 to 87891921 12 + TSS region transcription start site region 7914
Tssr7915 1 87896137 to 87896141 4 + TSS region transcription start site region 7915
Gm38365 1 87897540 to 87900532 2992 + unclassified gene predicted gene, 38365
Tssr7916 1 87900466 to 87900489 23 + TSS region transcription start site region 7916
Tssr7917 1 87901221 to 87901232 11 + TSS region transcription start site region 7917
Tssr7918 1 87901243 to 87901263 20 + TSS region transcription start site region 7918
Tssr152 1 87901266 to 87901285 19 + TSS region transcription start site region 152
Tssr7919 1 87909041 to 87909056 15 + TSS region transcription start site region 7919
Tssr7920 1 87909073 to 87909111 38 + TSS region transcription start site region 7920
Usp40 1 87945119 to 88008551 63432 - protein coding gene ubiquitin specific peptidase 40
Cpgi535 1 88008028 to 88008638 610 CpG island CpG island 535
Tssr12866 1 88008520 to 88008556 36 - TSS region transcription start site region 12866
Gm25198 1 88015924 to 88016033 109 + miRNA gene predicted gene, 25198
Gm5832 1 88022381 to 88023962 1581 + pseudogene predicted gene 5832
Tssr7921 1 88025141 to 88025158 17 + TSS region transcription start site region 7921
Gm15375 1 88025211 to 88026059 848 + pseudogene predicted gene 15375
Tssr7922 1 88055377 to 88055449 72 + TSS region transcription start site region 7922
Ugt1a10 1 88055388 to 88219004 163616 + protein coding gene UDP glycosyltransferase 1 family, polypeptide A10
Gm20528 1 88055393 to 88218584 163191 - unclassified non-coding RNA gene predicted gene 20528
Gm38421 1 88055411 to 88056340 929 + pseudogene predicted gene, 38421
Tssr7923 1 88055455 to 88055466 11 + TSS region transcription start site region 7923
Tssr7924 1 88055467 to 88055478 11 + TSS region transcription start site region 7924
Tssr7925 1 88055490 to 88055495 5 + TSS region transcription start site region 7925
Tssr7926 1 88055514 to 88055519 5 + TSS region transcription start site region 7926