Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:87249987-87559998

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm26187 1 87251148 to 87251248 100 + snRNA gene predicted gene, 26187
Cpgi526 1 87258498 to 87258746 248 CpG island CpG island 526
Cpgi527 1 87263891 to 87265016 1125 CpG island CpG island 527
Tssr7834 1 87264345 to 87264370 25 + TSS region transcription start site region 7834
Efhd1 1 87264363 to 87310839 46476 + protein coding gene EF hand domain containing 1
Tssr7835 1 87264413 to 87264444 31 + TSS region transcription start site region 7835
Efhd1os 1 87264481 to 87265174 693 - antisense lncRNA gene EF hand domain containing 1, opposite strand
Tssr7836 1 87264603 to 87264633 30 + TSS region transcription start site region 7836
Tssr7837 1 87281757 to 87281762 5 + TSS region transcription start site region 7837
Gm41911 1 87293832 to 87309496 15664 - lncRNA gene predicted gene, 41911
Cpgi528 1 87326620 to 87327746 1126 CpG island CpG island 528
Tssr7838 1 87326997 to 87327006 9 + TSS region transcription start site region 7838
Gigyf2 1 87326998 to 87450796 123798 + protein coding gene GRB10 interacting GYF protein 2
Tssr7839 1 87327008 to 87327042 34 + TSS region transcription start site region 7839
Tssr7840 1 87327044 to 87327053 9 + TSS region transcription start site region 7840
Tssr7841 1 87336608 to 87336613 5 + TSS region transcription start site region 7841
Gm22549 1 87341455 to 87341561 106 - snRNA gene predicted gene, 22549
Tssr149 1 87358375 to 87358379 4 + TSS region transcription start site region 149
Tssr7842 1 87360277 to 87360280 3 + TSS region transcription start site region 7842
Tssr7843 1 87362663 to 87362665 2 + TSS region transcription start site region 7843
Kcnj13 1 87386363 to 87394729 8366 - protein coding gene potassium inwardly-rectifying channel, subfamily J, member 13
Tssr12853 1 87394721 to 87394734 13 - TSS region transcription start site region 12853
Tssr7844 1 87403705 to 87403715 10 + TSS region transcription start site region 7844
Tssr7845 1 87404947 to 87404960 13 + TSS region transcription start site region 7845
Tssr7846 1 87404977 to 87404982 5 + TSS region transcription start site region 7846
Tssr7847 1 87404987 to 87404998 11 + TSS region transcription start site region 7847
Gm23504 1 87415255 to 87415349 94 - snRNA gene predicted gene, 23504
Tssr7848 1 87440464 to 87440477 13 + TSS region transcription start site region 7848
Tssr7849 1 87443013 to 87443015 2 + TSS region transcription start site region 7849
Tssr150 1 87449283 to 87449286 3 + TSS region transcription start site region 150
9130011L11Rik 1 87453706 to 87455933 2227 unclassified gene RIKEN cDNA 9130011L11 gene
Tssr7850 1 87470258 to 87470281 23 + TSS region transcription start site region 7850
Snorc 1 87470271 to 87475482 5211 + protein coding gene secondary ossification center associated regulator of chondrocyte maturation
Tssr7851 1 87470290 to 87470291 1 + TSS region transcription start site region 7851
Tssr7852 1 87470293 to 87470304 11 + TSS region transcription start site region 7852
Tssr7853 1 87470308 to 87470330 22 + TSS region transcription start site region 7853
Cpgi529 1 87475068 to 87475751 683 CpG island CpG island 529
Ngef 1 87476834 to 87573870 97036 - protein coding gene neuronal guanine nucleotide exchange factor
Cpgi530 1 87509215 to 87510880 1665 CpG island CpG island 530
Tssr12854 1 87510283 to 87510294 11 - TSS region transcription start site region 12854
Tssr12855 1 87510306 to 87510373 67 - TSS region transcription start site region 12855
Tssr12856 1 87510548 to 87510584 36 - TSS region transcription start site region 12856
Gm17181 1 87514175 to 87514297 122 + pseudogene predicted gene 17181
Gm6153 1 87543635 to 87544692 1057 - pseudogene predicted gene 6153
Gm46099 1 87550490 to 87568319 17829 + lncRNA gene predicted gene, 46099
Tssr7854 1 87551262 to 87551268 6 + TSS region transcription start site region 7854