Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:87214215-87805880

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115 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi525 1 87213566 to 87214626 1060 CpG island CpG island 525
Eif4e2 1 87213914 to 87240488 26574 + protein coding gene eukaryotic translation initiation factor 4E member 2
Tssr7831 1 87214301 to 87214369 68 + TSS region transcription start site region 7831
Tssr7832 1 87214376 to 87214389 13 + TSS region transcription start site region 7832
Tssr12852 1 87219633 to 87219656 23 - TSS region transcription start site region 12852
Tssr7833 1 87225911 to 87225938 27 + TSS region transcription start site region 7833
Gm26187 1 87251148 to 87251248 100 + snRNA gene predicted gene, 26187
Cpgi526 1 87258498 to 87258746 248 CpG island CpG island 526
Cpgi527 1 87263891 to 87265016 1125 CpG island CpG island 527
Tssr7834 1 87264345 to 87264370 25 + TSS region transcription start site region 7834
Efhd1 1 87264363 to 87310839 46476 + protein coding gene EF hand domain containing 1
Tssr7835 1 87264413 to 87264444 31 + TSS region transcription start site region 7835
Efhd1os 1 87264481 to 87265174 693 - antisense lncRNA gene EF hand domain containing 1, opposite strand
Tssr7836 1 87264603 to 87264633 30 + TSS region transcription start site region 7836
Tssr7837 1 87281757 to 87281762 5 + TSS region transcription start site region 7837
Gm41911 1 87293832 to 87309496 15664 - lncRNA gene predicted gene, 41911
Cpgi528 1 87326620 to 87327746 1126 CpG island CpG island 528
Tssr7838 1 87326997 to 87327006 9 + TSS region transcription start site region 7838
Gigyf2 1 87326998 to 87450796 123798 + protein coding gene GRB10 interacting GYF protein 2
Tssr7839 1 87327008 to 87327042 34 + TSS region transcription start site region 7839
Tssr7840 1 87327044 to 87327053 9 + TSS region transcription start site region 7840
Tssr7841 1 87336608 to 87336613 5 + TSS region transcription start site region 7841
Gm22549 1 87341455 to 87341561 106 - snRNA gene predicted gene, 22549
Tssr149 1 87358375 to 87358379 4 + TSS region transcription start site region 149
Tssr7842 1 87360277 to 87360280 3 + TSS region transcription start site region 7842
Tssr7843 1 87362663 to 87362665 2 + TSS region transcription start site region 7843
Kcnj13 1 87386363 to 87394729 8366 - protein coding gene potassium inwardly-rectifying channel, subfamily J, member 13
Tssr12853 1 87394721 to 87394734 13 - TSS region transcription start site region 12853
Tssr7844 1 87403705 to 87403715 10 + TSS region transcription start site region 7844
Tssr7845 1 87404947 to 87404960 13 + TSS region transcription start site region 7845
Tssr7846 1 87404977 to 87404982 5 + TSS region transcription start site region 7846
Tssr7847 1 87404987 to 87404998 11 + TSS region transcription start site region 7847
Gm23504 1 87415255 to 87415349 94 - snRNA gene predicted gene, 23504
Tssr7848 1 87440464 to 87440477 13 + TSS region transcription start site region 7848
Tssr7849 1 87443013 to 87443015 2 + TSS region transcription start site region 7849
Tssr150 1 87449283 to 87449286 3 + TSS region transcription start site region 150
9130011L11Rik 1 87453706 to 87455933 2227 unclassified gene RIKEN cDNA 9130011L11 gene
Tssr7850 1 87470258 to 87470281 23 + TSS region transcription start site region 7850
Snorc 1 87470271 to 87475482 5211 + protein coding gene secondary ossification center associated regulator of chondrocyte maturation
Tssr7851 1 87470290 to 87470291 1 + TSS region transcription start site region 7851
Tssr7852 1 87470293 to 87470304 11 + TSS region transcription start site region 7852
Tssr7853 1 87470308 to 87470330 22 + TSS region transcription start site region 7853
Cpgi529 1 87475068 to 87475751 683 CpG island CpG island 529
Ngef 1 87476834 to 87573870 97036 - protein coding gene neuronal guanine nucleotide exchange factor
Cpgi530 1 87509215 to 87510880 1665 CpG island CpG island 530
Tssr12854 1 87510283 to 87510294 11 - TSS region transcription start site region 12854
Tssr12855 1 87510306 to 87510373 67 - TSS region transcription start site region 12855
Tssr12856 1 87510548 to 87510584 36 - TSS region transcription start site region 12856
Gm17181 1 87514175 to 87514297 122 + pseudogene predicted gene 17181
Gm6153 1 87543635 to 87544692 1057 - pseudogene predicted gene 6153
Gm46099 1 87550490 to 87568319 17829 + lncRNA gene predicted gene, 46099
Tssr7854 1 87551262 to 87551268 6 + TSS region transcription start site region 7854
Tssr12857 1 87573825 to 87573871 46 - TSS region transcription start site region 12857
Tssr12858 1 87573905 to 87573934 29 - TSS region transcription start site region 12858
Tssr7855 1 87574016 to 87574032 16 + TSS region transcription start site region 7855
Neu2 1 87574027 to 87597845 23818 + protein coding gene neuraminidase 2
Tssr7856 1 87588781 to 87588786 5 + TSS region transcription start site region 7856
Tssr7857 1 87594545 to 87594556 11 + TSS region transcription start site region 7857
Tssr7858 1 87594583 to 87594597 14 + TSS region transcription start site region 7858
Tssr7859 1 87607809 to 87607822 13 + TSS region transcription start site region 7859
Cpgi531 1 87607838 to 87608053 215 CpG island CpG island 531
Tssr7860 1 87620306 to 87620323 17 + TSS region transcription start site region 7860
Inpp5d 1 87620312 to 87720507 100195 + protein coding gene inositol polyphosphate-5-phosphatase D
Tssr7861 1 87620334 to 87620401 67 + TSS region transcription start site region 7861
Tssr7862 1 87620431 to 87620438 7 + TSS region transcription start site region 7862
Tssr151 1 87620455 to 87620463 8 + TSS region transcription start site region 151
Cpgi532 1 87620512 to 87620687 175 CpG island CpG island 532
Tssr12859 1 87621518 to 87621540 22 - TSS region transcription start site region 12859
Tssr7863 1 87625511 to 87625531 20 + TSS region transcription start site region 7863
Tssr12860 1 87626434 to 87626464 30 - TSS region transcription start site region 12860
Tssr7864 1 87626680 to 87626690 10 + TSS region transcription start site region 7864
Tssr7865 1 87635962 to 87635978 16 + TSS region transcription start site region 7865
Tssr7866 1 87637125 to 87637130 5 + TSS region transcription start site region 7866
Tssr7867 1 87637507 to 87637512 5 + TSS region transcription start site region 7867
Tssr7868 1 87640699 to 87640748 49 + TSS region transcription start site region 7868
Tssr7869 1 87641175 to 87641178 3 + TSS region transcription start site region 7869
Tssr7870 1 87646610 to 87646645 35 + TSS region transcription start site region 7870
Tssr12861 1 87650649 to 87650675 26 - TSS region transcription start site region 12861
Tssr7871 1 87653313 to 87653326 13 + TSS region transcription start site region 7871
Tssr7872 1 87653331 to 87653342 11 + TSS region transcription start site region 7872
Tssr12862 1 87659795 to 87659808 13 - TSS region transcription start site region 12862
Tssr7873 1 87662121 to 87662125 4 + TSS region transcription start site region 7873
Tssr12863 1 87668157 to 87668159 2 - TSS region transcription start site region 12863
Tssr7874 1 87674202 to 87674214 12 + TSS region transcription start site region 7874
Tssr7875 1 87675640 to 87675671 31 + TSS region transcription start site region 7875
Tssr7876 1 87676194 to 87676209 15 + TSS region transcription start site region 7876
Tssr7877 1 87676230 to 87676280 50 + TSS region transcription start site region 7877
Tssr7878 1 87676283 to 87676306 23 + TSS region transcription start site region 7878
Tssr7879 1 87676448 to 87676467 19 + TSS region transcription start site region 7879
Tssr7880 1 87676483 to 87676495 12 + TSS region transcription start site region 7880
Tssr7881 1 87694864 to 87694870 6 + TSS region transcription start site region 7881
Tssr7882 1 87698146 to 87698157 11 + TSS region transcription start site region 7882
Gm33470 1 87699779 to 87724892 25113 - lncRNA gene predicted gene, 33470
Tssr7883 1 87700397 to 87700406 9 + TSS region transcription start site region 7883
Tssr7884 1 87701085 to 87701093 8 + TSS region transcription start site region 7884
Tssr7885 1 87701150 to 87701168 18 + TSS region transcription start site region 7885
Tssr7886 1 87701196 to 87701197 1 + TSS region transcription start site region 7886
Tssr7887 1 87701243 to 87701252 9 + TSS region transcription start site region 7887
Tssr7888 1 87701259 to 87701265 6 + TSS region transcription start site region 7888
Tssr7889 1 87702323 to 87702373 50 + TSS region transcription start site region 7889
Tssr7890 1 87716971 to 87716975 4 + TSS region transcription start site region 7890
Gm33517 1 87728270 to 87740862 12592 - lncRNA gene predicted gene, 33517
Cpgi533 1 87755810 to 87756740 930 CpG island CpG island 533
Tssr7891 1 87756004 to 87756115 111 + TSS region transcription start site region 7891
Atg16l1 1 87756006 to 87792428 36422 + protein coding gene autophagy related 16-like 1 (S. cerevisiae)
Tssr7892 1 87766101 to 87766119 18 + TSS region transcription start site region 7892
Tssr7893 1 87776936 to 87776941 5 + TSS region transcription start site region 7893
Gm25395 1 87776938 to 87777209 271 + snoRNA gene predicted gene, 25395
Scarna6 1 87784571 to 87784818 247 + snoRNA gene small Cajal body-specific RNA 6
Tssr7894 1 87803638 to 87803662 24 + TSS region transcription start site region 7894
Sag 1 87803680 to 87845158 41478 + protein coding gene S-antigen, retina and pineal gland (arrestin)
Tssr7895 1 87803863 to 87803880 17 + TSS region transcription start site region 7895
Tssr7896 1 87803897 to 87803906 9 + TSS region transcription start site region 7896
Tssr7897 1 87803915 to 87803929 14 + TSS region transcription start site region 7897
Tssr7898 1 87803933 to 87803945 12 + TSS region transcription start site region 7898