Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:87202008-87452042

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sst1 1 81674399 to 87203100 5528701 QTL susceptibility to tuberculosis 1
D1Mit49 1 87202974 to 87203100 126 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 49
D1Mit51.1 1 87204790 to 87204946 156 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 51.1
D1Mit51 1 87204862 to 87205110 248 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 51
Tssr7826 1 87205784 to 87205793 9 + TSS region transcription start site region 7826
Tssr7827 1 87205799 to 87205817 18 + TSS region transcription start site region 7827
Cocrb1 1 87205811 to 87211835 6024 QTL cocaine related behavior 1
Chrng 1 87205811 to 87211835 6024 + protein coding gene cholinergic receptor, nicotinic, gamma polypeptide
Cpgi524 1 87206054 to 87206565 511 CpG island CpG island 524
Cpgi525 1 87213566 to 87214626 1060 CpG island CpG island 525
Tssr7828 1 87213909 to 87213918 9 + TSS region transcription start site region 7828
Eif4e2 1 87213914 to 87240488 26574 + protein coding gene eukaryotic translation initiation factor 4E member 2
Tssr7829 1 87213924 to 87213990 66 + TSS region transcription start site region 7829
Tssr7830 1 87214059 to 87214068 9 + TSS region transcription start site region 7830
Tssr7831 1 87214301 to 87214369 68 + TSS region transcription start site region 7831
Tssr7832 1 87214376 to 87214389 13 + TSS region transcription start site region 7832
Tssr12852 1 87219633 to 87219656 23 - TSS region transcription start site region 12852
Tssr7833 1 87225911 to 87225938 27 + TSS region transcription start site region 7833
Gm26187 1 87251148 to 87251248 100 + snRNA gene predicted gene, 26187
Cpgi526 1 87258498 to 87258746 248 CpG island CpG island 526
Cpgi527 1 87263891 to 87265016 1125 CpG island CpG island 527
Tssr7834 1 87264345 to 87264370 25 + TSS region transcription start site region 7834
Efhd1 1 87264363 to 87310839 46476 + protein coding gene EF hand domain containing 1
Tssr7835 1 87264413 to 87264444 31 + TSS region transcription start site region 7835
Efhd1os 1 87264481 to 87265174 693 - antisense lncRNA gene EF hand domain containing 1, opposite strand
Tssr7836 1 87264603 to 87264633 30 + TSS region transcription start site region 7836
Tssr7837 1 87281757 to 87281762 5 + TSS region transcription start site region 7837
Gm41911 1 87293832 to 87309496 15664 - lncRNA gene predicted gene, 41911
Cpgi528 1 87326620 to 87327746 1126 CpG island CpG island 528
Tssr7838 1 87326997 to 87327006 9 + TSS region transcription start site region 7838
Gigyf2 1 87326998 to 87450796 123798 + protein coding gene GRB10 interacting GYF protein 2
Tssr7839 1 87327008 to 87327042 34 + TSS region transcription start site region 7839
Tssr7840 1 87327044 to 87327053 9 + TSS region transcription start site region 7840
Tssr7841 1 87336608 to 87336613 5 + TSS region transcription start site region 7841
Gm22549 1 87341455 to 87341561 106 - snRNA gene predicted gene, 22549
Tssr149 1 87358375 to 87358379 4 + TSS region transcription start site region 149
Tssr7842 1 87360277 to 87360280 3 + TSS region transcription start site region 7842
Tssr7843 1 87362663 to 87362665 2 + TSS region transcription start site region 7843
Kcnj13 1 87386363 to 87394729 8366 - protein coding gene potassium inwardly-rectifying channel, subfamily J, member 13
Tssr12853 1 87394721 to 87394734 13 - TSS region transcription start site region 12853
Tssr7844 1 87403705 to 87403715 10 + TSS region transcription start site region 7844
Tssr7845 1 87404947 to 87404960 13 + TSS region transcription start site region 7845
Tssr7846 1 87404977 to 87404982 5 + TSS region transcription start site region 7846
Tssr7847 1 87404987 to 87404998 11 + TSS region transcription start site region 7847
Gm23504 1 87415255 to 87415349 94 - snRNA gene predicted gene, 23504
Tssr7848 1 87440464 to 87440477 13 + TSS region transcription start site region 7848
Tssr7849 1 87443013 to 87443015 2 + TSS region transcription start site region 7849
Tssr150 1 87449283 to 87449286 3 + TSS region transcription start site region 150