Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:87100670-87280683

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108 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sst1 1 81674399 to 87203100 5528701 QTL susceptibility to tuberculosis 1
Alpi 1 87098002 to 87101606 3604 - protein coding gene alkaline phosphatase, intestinal
Tssr12833 1 87101561 to 87101566 5 - TSS region transcription start site region 12833
Tssr12834 1 87101590 to 87101617 27 - TSS region transcription start site region 12834
Tssr12835 1 87101630 to 87101636 6 - TSS region transcription start site region 12835
Tssr12836 1 87101715 to 87101719 4 - TSS region transcription start site region 12836
Tssr12837 1 87102236 to 87102252 16 - TSS region transcription start site region 12837
Gm29372 1 87116321 to 87117158 837 - pseudogene predicted gene 29372
Tssr7781 1 87124946 to 87124960 14 + TSS region transcription start site region 7781
Akp3 1 87125008 to 87127912 2904 + protein coding gene alkaline phosphatase 3, intestine, not Mn requiring
Tssr7782 1 87125396 to 87125403 7 + TSS region transcription start site region 7782
Tssr7783 1 87125688 to 87125696 8 + TSS region transcription start site region 7783
Tssr12838 1 87125718 to 87125730 12 - TSS region transcription start site region 12838
Tssr12839 1 87125733 to 87125740 7 - TSS region transcription start site region 12839
Tssr12840 1 87125746 to 87125749 3 - TSS region transcription start site region 12840
Tssr7784 1 87125931 to 87125938 7 + TSS region transcription start site region 7784
Tssr7785 1 87125967 to 87125977 10 + TSS region transcription start site region 7785
Tssr7786 1 87125997 to 87126004 7 + TSS region transcription start site region 7786
Tssr7787 1 87126323 to 87126333 10 + TSS region transcription start site region 7787
Tssr145 1 87126344 to 87126352 8 + TSS region transcription start site region 145
Tssr7788 1 87126725 to 87126731 6 + TSS region transcription start site region 7788
Tssr7789 1 87126755 to 87126765 10 + TSS region transcription start site region 7789
Tssr12841 1 87126798 to 87126808 10 - TSS region transcription start site region 12841
Tssr7790 1 87126809 to 87126818 9 + TSS region transcription start site region 7790
Tssr7791 1 87126933 to 87126945 12 + TSS region transcription start site region 7791
Tssr7792 1 87126961 to 87126971 10 + TSS region transcription start site region 7792
Tssr7793 1 87126974 to 87126982 8 + TSS region transcription start site region 7793
Tssr7794 1 87126991 to 87126995 4 + TSS region transcription start site region 7794
Tssr7795 1 87127017 to 87127027 10 + TSS region transcription start site region 7795
Tssr7796 1 87127040 to 87127050 10 + TSS region transcription start site region 7796
Tssr7797 1 87127057 to 87127063 6 + TSS region transcription start site region 7797
Tssr7798 1 87127094 to 87127101 7 + TSS region transcription start site region 7798
Cpgi518 1 87127110 to 87127957 847 CpG island CpG island 518
Tssr12842 1 87127124 to 87127128 4 - TSS region transcription start site region 12842
Tssr7799 1 87127330 to 87127338 8 + TSS region transcription start site region 7799
Tssr7800 1 87127349 to 87127374 25 + TSS region transcription start site region 7800
Tssr12843 1 87127386 to 87127391 5 - TSS region transcription start site region 12843
Tssr7801 1 87127408 to 87127419 11 + TSS region transcription start site region 7801
Tssr7802 1 87127535 to 87127541 6 + TSS region transcription start site region 7802
Tssr12844 1 87127577 to 87127596 19 - TSS region transcription start site region 12844
Tssr146 1 87127588 to 87127594 6 + TSS region transcription start site region 146
Tssr7803 1 87127596 to 87127601 5 + TSS region transcription start site region 7803
Tssr7804 1 87127620 to 87127626 6 + TSS region transcription start site region 7804
Tssr7805 1 87127694 to 87127695 1 + TSS region transcription start site region 7805
Tssr7806 1 87127708 to 87127711 3 + TSS region transcription start site region 7806
Tssr7807 1 87127728 to 87127740 12 + TSS region transcription start site region 7807
Tssr12845 1 87127748 to 87127792 44 - TSS region transcription start site region 12845
Tssr12846 1 87127809 to 87127833 24 - TSS region transcription start site region 12846
Tssr7808 1 87127833 to 87127836 3 + TSS region transcription start site region 7808
Tssr7809 1 87127903 to 87127913 10 + TSS region transcription start site region 7809
Tssr7810 1 87127928 to 87127953 25 + TSS region transcription start site region 7810
Tssr147 1 87127940 to 87127945 5 - TSS region transcription start site region 147
Tssr7811 1 87127957 to 87127974 17 + TSS region transcription start site region 7811
Tssr7812 1 87128007 to 87128012 5 + TSS region transcription start site region 7812
Tssr7813 1 87128048 to 87128051 3 + TSS region transcription start site region 7813
Tssr7814 1 87128078 to 87128092 14 + TSS region transcription start site region 7814
Tssr7815 1 87128146 to 87128162 16 + TSS region transcription start site region 7815
Tssr7816 1 87128186 to 87128189 3 + TSS region transcription start site region 7816
Tssr7817 1 87128198 to 87128207 9 + TSS region transcription start site region 7817
Tssr12847 1 87128280 to 87128302 22 - TSS region transcription start site region 12847
Tssr12848 1 87128349 to 87128365 16 - TSS region transcription start site region 12848
Tssr12849 1 87128368 to 87128378 10 - TSS region transcription start site region 12849
Tssr7818 1 87128373 to 87128388 15 + TSS region transcription start site region 7818
Tssr148 1 87128602 to 87128605 3 + TSS region transcription start site region 148
Tssr7819 1 87128689 to 87128697 8 + TSS region transcription start site region 7819
Gm29374 1 87142874 to 87146983 4109 - lincRNA gene predicted gene 29374
Ecel1 1 87147655 to 87156521 8866 - protein coding gene endothelin converting enzyme-like 1
Cpgi519 1 87149383 to 87149562 179 CpG island CpG island 519
Gm33292 1 87150916 to 87172246 21330 + lncRNA gene predicted gene, 33292
Cpgi520 1 87153449 to 87155124 1675 CpG island CpG island 520
Cpgi521 1 87155402 to 87156593 1191 CpG island CpG island 521
Tssr12850 1 87156127 to 87156145 18 - TSS region transcription start site region 12850
Tssr12851 1 87180960 to 87180969 9 - TSS region transcription start site region 12851
Tssr7820 1 87181240 to 87181254 14 + TSS region transcription start site region 7820
Tssr7821 1 87181261 to 87181279 18 + TSS region transcription start site region 7821
Tssr7822 1 87183310 to 87183316 6 + TSS region transcription start site region 7822
Prss56 1 87183313 to 87188405 5092 + protein coding gene protease, serine 56
Cpgi522 1 87184599 to 87185059 460 CpG island CpG island 522
Cpgi523 1 87186383 to 87187269 886 CpG island CpG island 523
Tssr7823 1 87186661 to 87186677 16 + TSS region transcription start site region 7823
Chrnd 1 87190607 to 87200070 9463 + protein coding gene cholinergic receptor, nicotinic, delta polypeptide
Tssr7824 1 87190624 to 87190640 16 + TSS region transcription start site region 7824
Tssr7825 1 87190670 to 87190683 13 + TSS region transcription start site region 7825
D1Mit49 1 87202974 to 87203100 126 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 49
D1Mit51.1 1 87204790 to 87204946 156 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 51.1
D1Mit51 1 87204862 to 87205110 248 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 51
Tssr7826 1 87205784 to 87205793 9 + TSS region transcription start site region 7826
Tssr7827 1 87205799 to 87205817 18 + TSS region transcription start site region 7827
Chrng 1 87205811 to 87211835 6024 + protein coding gene cholinergic receptor, nicotinic, gamma polypeptide
Cocrb1 1 87205811 to 87211835 6024 QTL cocaine related behavior 1
Cpgi524 1 87206054 to 87206565 511 CpG island CpG island 524
Cpgi525 1 87213566 to 87214626 1060 CpG island CpG island 525
Tssr7828 1 87213909 to 87213918 9 + TSS region transcription start site region 7828
Eif4e2 1 87213914 to 87240488 26574 + protein coding gene eukaryotic translation initiation factor 4E member 2
Tssr7829 1 87213924 to 87213990 66 + TSS region transcription start site region 7829
Tssr7830 1 87214059 to 87214068 9 + TSS region transcription start site region 7830
Tssr7831 1 87214301 to 87214369 68 + TSS region transcription start site region 7831
Tssr7832 1 87214376 to 87214389 13 + TSS region transcription start site region 7832
Tssr12852 1 87219633 to 87219656 23 - TSS region transcription start site region 12852
Tssr7833 1 87225911 to 87225938 27 + TSS region transcription start site region 7833
Gm26187 1 87251148 to 87251248 100 + snRNA gene predicted gene, 26187
Cpgi526 1 87258498 to 87258746 248 CpG island CpG island 526
Cpgi527 1 87263891 to 87265016 1125 CpG island CpG island 527
Tssr7834 1 87264345 to 87264370 25 + TSS region transcription start site region 7834
Efhd1 1 87264363 to 87310839 46476 + protein coding gene EF hand domain containing 1
Tssr7835 1 87264413 to 87264444 31 + TSS region transcription start site region 7835
Efhd1os 1 87264481 to 87265174 693 - antisense lncRNA gene EF hand domain containing 1, opposite strand
Tssr7836 1 87264603 to 87264633 30 + TSS region transcription start site region 7836