Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:86847655-87456521

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167 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sst1 1 81674399 to 87203100 5528701 QTL susceptibility to tuberculosis 1
Dis3l2 1 86703808 to 87050095 346287 + protein coding gene DIS3 like 3'-5' exoribonuclease 2
Gm37541 1 86874350 to 86876664 2314 + unclassified gene predicted gene, 37541
Gm38021 1 86893573 to 86895132 1559 + unclassified gene predicted gene, 38021
Gm6136 1 86908793 to 86909683 890 - pseudogene predicted pseudogene 6136
Tssr12816 1 86909703 to 86909707 4 - TSS region transcription start site region 12816
Gm37967 1 86917992 to 86920656 2664 + unclassified gene predicted gene, 37967
Gm41909 1 86922934 to 86930742 7808 - lncRNA gene predicted gene, 41909
Gm37017 1 86988270 to 86989016 746 + unclassified gene predicted gene, 37017
Tssr7777 1 87020504 to 87020508 4 + TSS region transcription start site region 7777
Gm37447 1 87036723 to 87039650 2927 + unclassified gene predicted gene, 37447
Gm28375 1 87056505 to 87067441 10936 - antisense lncRNA gene predicted gene 28375
Tssr7778 1 87068001 to 87068018 17 + TSS region transcription start site region 7778
Akp-ps1 1 87068030 to 87071005 2975 + pseudogene alkaline phosphatase pseudogene 1
Gm41910 1 87071419 to 87072091 672 + lncRNA gene predicted gene, 41910
Gm29371 1 87080171 to 87096418 16247 + lincRNA gene predicted gene 29371
Alppl2 1 87086694 to 87089928 3234 - protein coding gene alkaline phosphatase, placental-like 2
Cpgi516 1 87087055 to 87087505 450 CpG island CpG island 516
Alpi 1 87098002 to 87101606 3604 - protein coding gene alkaline phosphatase, intestinal
Tssr12817 1 87098098 to 87098116 18 - TSS region transcription start site region 12817
Tssr12818 1 87098539 to 87098558 19 - TSS region transcription start site region 12818
Tssr12819 1 87098559 to 87098599 40 - TSS region transcription start site region 12819
Cpgi517 1 87098597 to 87099086 489 CpG island CpG island 517
Tssr12820 1 87098801 to 87098811 10 - TSS region transcription start site region 12820
Tssr12821 1 87098877 to 87098904 27 - TSS region transcription start site region 12821
Tssr7779 1 87099076 to 87099100 24 + TSS region transcription start site region 7779
Tssr12822 1 87099135 to 87099144 9 - TSS region transcription start site region 12822
Tssr12823 1 87099419 to 87099428 9 - TSS region transcription start site region 12823
Tssr12824 1 87099445 to 87099454 9 - TSS region transcription start site region 12824
Tssr12825 1 87099525 to 87099535 10 - TSS region transcription start site region 12825
Tssr12826 1 87099549 to 87099561 12 - TSS region transcription start site region 12826
Tssr7780 1 87099700 to 87099721 21 + TSS region transcription start site region 7780
Tssr12827 1 87099734 to 87099747 13 - TSS region transcription start site region 12827
Tssr12828 1 87100181 to 87100192 11 - TSS region transcription start site region 12828
Tssr12829 1 87100316 to 87100354 38 - TSS region transcription start site region 12829
Tssr12830 1 87100562 to 87100571 9 - TSS region transcription start site region 12830
Tssr12831 1 87100579 to 87100592 13 - TSS region transcription start site region 12831
Tssr12832 1 87100598 to 87100612 14 - TSS region transcription start site region 12832
Tssr12833 1 87101561 to 87101566 5 - TSS region transcription start site region 12833
Tssr12834 1 87101590 to 87101617 27 - TSS region transcription start site region 12834
Tssr12835 1 87101630 to 87101636 6 - TSS region transcription start site region 12835
Tssr12836 1 87101715 to 87101719 4 - TSS region transcription start site region 12836
Tssr12837 1 87102236 to 87102252 16 - TSS region transcription start site region 12837
Gm29372 1 87116321 to 87117158 837 - pseudogene predicted gene 29372
Tssr7781 1 87124946 to 87124960 14 + TSS region transcription start site region 7781
Akp3 1 87125008 to 87127912 2904 + protein coding gene alkaline phosphatase 3, intestine, not Mn requiring
Tssr7782 1 87125396 to 87125403 7 + TSS region transcription start site region 7782
Tssr7783 1 87125688 to 87125696 8 + TSS region transcription start site region 7783
Tssr12838 1 87125718 to 87125730 12 - TSS region transcription start site region 12838
Tssr12839 1 87125733 to 87125740 7 - TSS region transcription start site region 12839
Tssr12840 1 87125746 to 87125749 3 - TSS region transcription start site region 12840
Tssr7784 1 87125931 to 87125938 7 + TSS region transcription start site region 7784
Tssr7785 1 87125967 to 87125977 10 + TSS region transcription start site region 7785
Tssr7786 1 87125997 to 87126004 7 + TSS region transcription start site region 7786
Tssr7787 1 87126323 to 87126333 10 + TSS region transcription start site region 7787
Tssr145 1 87126344 to 87126352 8 + TSS region transcription start site region 145
Tssr7788 1 87126725 to 87126731 6 + TSS region transcription start site region 7788
Tssr7789 1 87126755 to 87126765 10 + TSS region transcription start site region 7789
Tssr12841 1 87126798 to 87126808 10 - TSS region transcription start site region 12841
Tssr7790 1 87126809 to 87126818 9 + TSS region transcription start site region 7790
Tssr7791 1 87126933 to 87126945 12 + TSS region transcription start site region 7791
Tssr7792 1 87126961 to 87126971 10 + TSS region transcription start site region 7792
Tssr7793 1 87126974 to 87126982 8 + TSS region transcription start site region 7793
Tssr7794 1 87126991 to 87126995 4 + TSS region transcription start site region 7794
Tssr7795 1 87127017 to 87127027 10 + TSS region transcription start site region 7795
Tssr7796 1 87127040 to 87127050 10 + TSS region transcription start site region 7796
Tssr7797 1 87127057 to 87127063 6 + TSS region transcription start site region 7797
Tssr7798 1 87127094 to 87127101 7 + TSS region transcription start site region 7798
Cpgi518 1 87127110 to 87127957 847 CpG island CpG island 518
Tssr12842 1 87127124 to 87127128 4 - TSS region transcription start site region 12842
Tssr7799 1 87127330 to 87127338 8 + TSS region transcription start site region 7799
Tssr7800 1 87127349 to 87127374 25 + TSS region transcription start site region 7800
Tssr12843 1 87127386 to 87127391 5 - TSS region transcription start site region 12843
Tssr7801 1 87127408 to 87127419 11 + TSS region transcription start site region 7801
Tssr7802 1 87127535 to 87127541 6 + TSS region transcription start site region 7802
Tssr12844 1 87127577 to 87127596 19 - TSS region transcription start site region 12844
Tssr146 1 87127588 to 87127594 6 + TSS region transcription start site region 146
Tssr7803 1 87127596 to 87127601 5 + TSS region transcription start site region 7803
Tssr7804 1 87127620 to 87127626 6 + TSS region transcription start site region 7804
Tssr7805 1 87127694 to 87127695 1 + TSS region transcription start site region 7805
Tssr7806 1 87127708 to 87127711 3 + TSS region transcription start site region 7806
Tssr7807 1 87127728 to 87127740 12 + TSS region transcription start site region 7807
Tssr12845 1 87127748 to 87127792 44 - TSS region transcription start site region 12845
Tssr12846 1 87127809 to 87127833 24 - TSS region transcription start site region 12846
Tssr7808 1 87127833 to 87127836 3 + TSS region transcription start site region 7808
Tssr7809 1 87127903 to 87127913 10 + TSS region transcription start site region 7809
Tssr7810 1 87127928 to 87127953 25 + TSS region transcription start site region 7810
Tssr147 1 87127940 to 87127945 5 - TSS region transcription start site region 147
Tssr7811 1 87127957 to 87127974 17 + TSS region transcription start site region 7811
Tssr7812 1 87128007 to 87128012 5 + TSS region transcription start site region 7812
Tssr7813 1 87128048 to 87128051 3 + TSS region transcription start site region 7813
Tssr7814 1 87128078 to 87128092 14 + TSS region transcription start site region 7814
Tssr7815 1 87128146 to 87128162 16 + TSS region transcription start site region 7815
Tssr7816 1 87128186 to 87128189 3 + TSS region transcription start site region 7816
Tssr7817 1 87128198 to 87128207 9 + TSS region transcription start site region 7817
Tssr12847 1 87128280 to 87128302 22 - TSS region transcription start site region 12847
Tssr12848 1 87128349 to 87128365 16 - TSS region transcription start site region 12848
Tssr12849 1 87128368 to 87128378 10 - TSS region transcription start site region 12849
Tssr7818 1 87128373 to 87128388 15 + TSS region transcription start site region 7818
Tssr148 1 87128602 to 87128605 3 + TSS region transcription start site region 148
Tssr7819 1 87128689 to 87128697 8 + TSS region transcription start site region 7819
Gm29374 1 87142874 to 87146983 4109 - lincRNA gene predicted gene 29374
Ecel1 1 87147655 to 87156521 8866 - protein coding gene endothelin converting enzyme-like 1
Cpgi519 1 87149383 to 87149562 179 CpG island CpG island 519
Gm33292 1 87150916 to 87172246 21330 + lncRNA gene predicted gene, 33292
Cpgi520 1 87153449 to 87155124 1675 CpG island CpG island 520
Cpgi521 1 87155402 to 87156593 1191 CpG island CpG island 521
Tssr12850 1 87156127 to 87156145 18 - TSS region transcription start site region 12850
Tssr12851 1 87180960 to 87180969 9 - TSS region transcription start site region 12851
Tssr7820 1 87181240 to 87181254 14 + TSS region transcription start site region 7820
Tssr7821 1 87181261 to 87181279 18 + TSS region transcription start site region 7821
Tssr7822 1 87183310 to 87183316 6 + TSS region transcription start site region 7822
Prss56 1 87183313 to 87188405 5092 + protein coding gene protease, serine 56
Cpgi522 1 87184599 to 87185059 460 CpG island CpG island 522
Cpgi523 1 87186383 to 87187269 886 CpG island CpG island 523
Tssr7823 1 87186661 to 87186677 16 + TSS region transcription start site region 7823
Chrnd 1 87190607 to 87200070 9463 + protein coding gene cholinergic receptor, nicotinic, delta polypeptide
Tssr7824 1 87190624 to 87190640 16 + TSS region transcription start site region 7824
Tssr7825 1 87190670 to 87190683 13 + TSS region transcription start site region 7825
D1Mit49 1 87202974 to 87203100 126 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 49
D1Mit51.1 1 87204790 to 87204946 156 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 51.1
D1Mit51 1 87204862 to 87205110 248 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 51
Tssr7826 1 87205784 to 87205793 9 + TSS region transcription start site region 7826
Tssr7827 1 87205799 to 87205817 18 + TSS region transcription start site region 7827
Cocrb1 1 87205811 to 87211835 6024 QTL cocaine related behavior 1
Chrng 1 87205811 to 87211835 6024 + protein coding gene cholinergic receptor, nicotinic, gamma polypeptide
Cpgi524 1 87206054 to 87206565 511 CpG island CpG island 524
Cpgi525 1 87213566 to 87214626 1060 CpG island CpG island 525
Tssr7828 1 87213909 to 87213918 9 + TSS region transcription start site region 7828
Eif4e2 1 87213914 to 87240488 26574 + protein coding gene eukaryotic translation initiation factor 4E member 2
Tssr7829 1 87213924 to 87213990 66 + TSS region transcription start site region 7829
Tssr7830 1 87214059 to 87214068 9 + TSS region transcription start site region 7830
Tssr7831 1 87214301 to 87214369 68 + TSS region transcription start site region 7831
Tssr7832 1 87214376 to 87214389 13 + TSS region transcription start site region 7832
Tssr12852 1 87219633 to 87219656 23 - TSS region transcription start site region 12852
Tssr7833 1 87225911 to 87225938 27 + TSS region transcription start site region 7833
Gm26187 1 87251148 to 87251248 100 + snRNA gene predicted gene, 26187
Cpgi526 1 87258498 to 87258746 248 CpG island CpG island 526
Cpgi527 1 87263891 to 87265016 1125 CpG island CpG island 527
Tssr7834 1 87264345 to 87264370 25 + TSS region transcription start site region 7834
Efhd1 1 87264363 to 87310839 46476 + protein coding gene EF hand domain containing 1
Tssr7835 1 87264413 to 87264444 31 + TSS region transcription start site region 7835
Efhd1os 1 87264481 to 87265174 693 - antisense lncRNA gene EF hand domain containing 1, opposite strand
Tssr7836 1 87264603 to 87264633 30 + TSS region transcription start site region 7836
Tssr7837 1 87281757 to 87281762 5 + TSS region transcription start site region 7837
Gm41911 1 87293832 to 87309496 15664 - lncRNA gene predicted gene, 41911
Cpgi528 1 87326620 to 87327746 1126 CpG island CpG island 528
Tssr7838 1 87326997 to 87327006 9 + TSS region transcription start site region 7838
Gigyf2 1 87326998 to 87450796 123798 + protein coding gene GRB10 interacting GYF protein 2
Tssr7839 1 87327008 to 87327042 34 + TSS region transcription start site region 7839
Tssr7840 1 87327044 to 87327053 9 + TSS region transcription start site region 7840
Tssr7841 1 87336608 to 87336613 5 + TSS region transcription start site region 7841
Gm22549 1 87341455 to 87341561 106 - snRNA gene predicted gene, 22549
Tssr149 1 87358375 to 87358379 4 + TSS region transcription start site region 149
Tssr7842 1 87360277 to 87360280 3 + TSS region transcription start site region 7842
Tssr7843 1 87362663 to 87362665 2 + TSS region transcription start site region 7843
Kcnj13 1 87386363 to 87394729 8366 - protein coding gene potassium inwardly-rectifying channel, subfamily J, member 13
Tssr12853 1 87394721 to 87394734 13 - TSS region transcription start site region 12853
Tssr7844 1 87403705 to 87403715 10 + TSS region transcription start site region 7844
Tssr7845 1 87404947 to 87404960 13 + TSS region transcription start site region 7845
Tssr7846 1 87404977 to 87404982 5 + TSS region transcription start site region 7846
Tssr7847 1 87404987 to 87404998 11 + TSS region transcription start site region 7847
Gm23504 1 87415255 to 87415349 94 - snRNA gene predicted gene, 23504
Tssr7848 1 87440464 to 87440477 13 + TSS region transcription start site region 7848
Tssr7849 1 87443013 to 87443015 2 + TSS region transcription start site region 7849
Tssr150 1 87449283 to 87449286 3 + TSS region transcription start site region 150
9130011L11Rik 1 87453706 to 87455933 2227 unclassified gene RIKEN cDNA 9130011L11 gene